Wall clock time and date at job start Sun Mar 29 2020 21:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47186 * 2 1 4 4 C 1.50701 * 109.46868 * 119.99592 * 2 1 3 5 5 H 1.08008 * 119.99691 * 119.99892 * 4 2 1 6 6 C 1.37874 * 120.00179 * 299.99700 * 4 2 1 7 7 N 1.31508 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47088 * 60.00322 * 8 6 4 10 10 H 1.48500 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47341 * 300.00266 * 8 6 4 12 12 N 1.46897 * 109.47002 * 239.99751 * 2 1 3 13 13 C 1.46897 * 111.00100 * 85.00255 * 12 2 1 14 14 C 1.53003 * 109.47293 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.90690 * 64.29873 * 14 13 12 16 16 C 1.53994 * 109.91846 * 185.40341 * 14 13 12 17 17 C 1.54590 * 105.14312 * 120.77590 * 16 14 13 18 18 C 1.54940 * 102.92203 * 21.95574 * 17 16 14 19 19 N 1.47900 * 110.08046 * 303.09010 * 14 13 12 20 20 C 1.46898 * 111.00131 * 94.70988 * 19 14 13 21 21 H 1.09002 * 109.47106 * 59.99962 * 1 2 3 22 22 H 1.09000 * 109.47660 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47373 * 300.00517 * 1 2 3 24 24 H 0.97005 * 119.99962 * 179.97438 * 7 6 4 25 25 H 1.00900 * 111.00269 * 321.04701 * 12 2 1 26 26 H 1.09004 * 109.47356 * 59.99934 * 13 12 2 27 27 H 1.09002 * 109.47337 * 299.99721 * 13 12 2 28 28 H 1.09005 * 110.30831 * 239.69040 * 16 14 13 29 29 H 1.09000 * 110.30875 * 1.85662 * 16 14 13 30 30 H 1.09004 * 110.72830 * 140.31216 * 17 16 14 31 31 H 1.08997 * 110.72586 * 263.59819 * 17 16 14 32 32 H 1.08998 * 110.66967 * 81.01745 * 18 17 16 33 33 H 1.09004 * 110.66927 * 203.99015 * 18 17 16 34 34 H 1.08999 * 109.46928 * 59.99838 * 20 19 14 35 35 H 1.09003 * 109.47254 * 179.97438 * 20 19 14 36 36 H 1.08994 * 109.47303 * 300.00106 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0196 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 2.5962 -0.5330 -3.5741 15 1 1.8862 -1.3109 -3.8552 16 6 2.7947 0.4448 -4.7471 17 6 4.2912 0.3324 -5.1178 18 6 4.6851 -1.0551 -4.5517 19 7 3.9152 -1.1358 -3.2840 20 6 3.7716 -2.5298 -2.8432 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7082 1.1611 3.4843 25 1 1.4495 -1.4980 -1.4100 26 1 2.7589 1.0461 -2.1182 27 1 1.0871 0.6162 -2.5526 28 1 2.1724 0.1523 -5.5929 29 1 2.5574 1.4621 -4.4358 30 1 4.4238 0.3593 -6.1994 31 1 4.8681 1.1227 -4.6376 32 1 4.3846 -1.8490 -5.2354 33 1 5.7567 -1.1013 -4.3575 34 1 3.2868 -3.1107 -3.6277 35 1 4.7564 -2.9490 -2.6370 36 1 3.1650 -2.5640 -1.9383 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219415333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:52 Heat of formation + Delta-G solvation = -16.582360 kcal Electronic energy + Delta-G solvation = -14699.454558 eV Core-core repulsion = 12410.422567 eV Total energy + Delta-G solvation = -2289.031991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09175 -37.45591 -34.49038 -32.97665 -31.67355 -28.87389 -27.22124 -26.47193 -24.53248 -22.21238 -21.82045 -20.99726 -18.34005 -16.90169 -16.77082 -16.48765 -15.78584 -15.25643 -15.01779 -14.50811 -14.43522 -13.77477 -13.60856 -13.18717 -13.06182 -12.90635 -12.77851 -12.38202 -12.24767 -12.22418 -12.16467 -11.98139 -11.78240 -11.62612 -11.36543 -10.96849 -10.45916 -9.16487 -8.80223 -8.06819 -6.17611 1.43643 1.45967 1.53542 2.45975 3.17531 3.21237 3.58371 3.84744 4.01610 4.09330 4.29845 4.49903 4.61007 4.64783 4.69094 4.71971 4.76664 4.85537 4.91891 4.98644 5.02845 5.09131 5.12499 5.22142 5.37223 5.38551 5.45826 5.71417 5.84088 6.16442 6.32236 6.32789 6.71226 6.90034 6.99032 7.52281 8.98667 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.007277 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.768949 B = 3846.724395 C = 4192.271087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.004 1.004 4 C -0.511 4.511 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.672 5.672 13 C 0.081 3.919 14 C 0.074 3.926 15 H 0.048 0.952 16 C -0.125 4.125 17 C -0.116 4.116 18 C 0.030 3.970 19 N -0.524 5.524 20 C 0.024 3.976 21 H 0.023 0.977 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.260 0.740 25 H 0.324 0.676 26 H 0.047 0.953 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -3.366 -14.851 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.014 0.986 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.301 5.301 13 C -0.050 4.050 14 C -0.035 4.035 15 H 0.066 0.934 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.098 4.098 19 N -0.248 5.248 20 C -0.124 4.124 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.141 0.859 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.547 -2.902 -14.117 15.112 hybrid contribution -1.263 -0.533 0.382 1.423 sum 3.284 -3.435 -13.735 14.533 Atomic orbital electron populations 1.22237 1.00157 0.99141 0.99935 1.18912 0.89802 0.92516 0.87993 0.98638 1.21437 1.30110 1.12349 0.91085 0.92789 1.25730 0.95552 0.95925 1.01914 1.70009 1.38227 1.24401 1.23938 0.85575 0.78563 0.78717 0.78503 1.20079 1.20988 1.19544 1.60660 1.57004 1.09134 1.03309 1.21930 0.97064 0.95338 0.90640 1.22371 0.90901 0.96336 0.93910 0.93419 1.22436 0.97804 0.99369 0.96703 1.22454 0.94997 0.96604 1.01373 1.23334 0.99148 0.97356 0.89917 1.64458 1.13591 1.17827 1.28922 1.22475 1.01825 0.87740 1.00402 0.95780 0.94938 0.92073 0.93087 0.85886 0.93398 0.96274 0.89764 0.91173 0.88833 0.91562 0.93224 0.90121 0.95382 0.91724 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.94 71.98 0.64 -7.03 16 2 C 0.22 11.36 2.57 44.17 0.11 11.48 16 3 H 0.00 -0.26 7.80 -2.39 -0.02 -0.28 16 4 C -0.51 -29.30 8.84 25.60 0.23 -29.08 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.93 -54.81 11.32 21.45 0.24 -54.57 16 8 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.67 -29.25 4.61 -495.45 -2.28 -31.53 16 13 C 0.08 3.00 4.96 86.30 0.43 3.43 16 14 C 0.07 2.17 2.78 45.06 0.13 2.30 16 15 H 0.05 1.36 7.73 -2.39 -0.02 1.34 16 16 C -0.12 -2.84 6.57 31.47 0.21 -2.64 16 17 C -0.12 -2.37 7.06 31.80 0.22 -2.15 16 18 C 0.03 0.69 6.56 86.65 0.57 1.26 16 19 N -0.52 -15.97 5.08 -884.05 -4.49 -20.46 16 20 C 0.02 0.71 9.23 127.69 1.18 1.89 16 21 H 0.02 1.04 7.45 -2.39 -0.02 1.03 16 22 H 0.03 1.52 8.13 -2.39 -0.02 1.50 16 23 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 24 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 25 H 0.32 13.29 7.86 -89.69 -0.70 12.59 16 26 H 0.05 1.97 8.06 -2.38 -0.02 1.95 16 27 H 0.02 0.70 7.44 -2.39 -0.02 0.68 16 28 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.07 1.65 7.69 -2.39 -0.02 1.63 16 30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.02 7.96 -2.39 -0.02 1.00 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.03 0.71 8.00 -2.39 -0.02 0.69 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 2.38 6.09 -2.39 -0.01 2.37 16 Total: -1.00 -62.30 281.78 -0.01 -62.31 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.33 Total: 16.82 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.16 Total: -19.73 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -6.53 Total: -106.56 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -62.30 -0.01 -62.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.732 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds