Wall clock time and date at job start Sun Mar 29 2020 21:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.50701 * 109.47125 * 239.99751 * 2 1 3 5 5 H 1.07998 * 120.00342 * 239.99654 * 4 2 1 6 6 C 1.37886 * 119.99789 * 60.00058 * 4 2 1 7 7 N 1.31518 * 120.00016 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46867 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46759 * 119.99877 * 8 6 4 11 11 H 1.48494 * 109.47144 * 240.00177 * 8 6 4 12 12 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 13 13 C 1.46906 * 110.99789 * 274.99821 * 12 2 1 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.90601 * 63.90275 * 14 13 12 16 16 C 1.53991 * 109.91612 * 185.00248 * 14 13 12 17 17 C 1.54594 * 105.14090 * 120.58152 * 16 14 13 18 18 C 1.54931 * 102.92243 * 21.95405 * 17 16 14 19 19 N 1.47902 * 109.92032 * 302.59200 * 14 13 12 20 20 C 1.46900 * 110.99790 * 94.80212 * 19 14 13 21 21 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 22 22 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 23 23 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99643 * 180.02562 * 7 6 4 25 25 H 1.00902 * 111.00273 * 38.95343 * 12 2 1 26 26 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 27 27 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 28 28 H 1.09004 * 110.30641 * 239.49475 * 16 14 13 29 29 H 1.09004 * 110.30920 * 1.66229 * 16 14 13 30 30 H 1.08998 * 110.72227 * 140.31556 * 17 16 14 31 31 H 1.08999 * 110.72421 * 263.59884 * 17 16 14 32 32 H 1.09002 * 110.66536 * 81.02231 * 18 17 16 33 33 H 1.08995 * 110.67166 * 203.98623 * 18 17 16 34 34 H 1.08999 * 109.47403 * 60.00491 * 20 19 14 35 35 H 1.09005 * 109.46723 * 179.97438 * 20 19 14 36 36 H 1.09003 * 109.47135 * 299.99899 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5951 -0.5332 3.5744 15 1 3.6169 -0.8712 3.4022 16 6 2.5468 0.3821 4.8119 17 6 1.6193 -0.3425 5.8142 18 6 1.6751 -1.8151 5.3357 19 7 1.7181 -1.6903 3.8563 20 6 2.2472 -2.9143 3.2398 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.7089 1.1613 -3.4844 25 1 1.4495 -1.4980 1.4100 26 1 2.7588 1.0461 2.1182 27 1 1.0870 0.6163 2.5525 28 1 3.5444 0.4983 5.2356 29 1 2.1316 1.3546 4.5472 30 1 2.0037 -0.2522 6.8301 31 1 0.6029 0.0458 5.7492 32 1 2.5748 -2.3062 5.7066 33 1 0.7841 -2.3568 5.6529 34 1 3.2397 -3.1225 3.6394 35 1 1.5835 -3.7497 3.4631 36 1 2.3112 -2.7790 2.1601 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219415405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:56 Heat of formation + Delta-G solvation = 3.124122 kcal Electronic energy + Delta-G solvation = -14717.759684 eV Core-core repulsion = 12429.582231 eV Total energy + Delta-G solvation = -2288.177454 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03077 -35.57550 -32.50623 -32.02294 -30.05584 -27.26829 -25.48792 -25.03803 -23.05702 -21.08582 -19.97929 -19.72858 -16.43947 -15.87755 -15.20980 -14.78292 -14.51086 -13.63673 -13.51397 -13.05505 -12.63503 -12.54300 -12.20519 -11.79980 -11.64767 -11.25364 -11.16123 -10.98105 -10.81670 -10.72532 -10.53980 -10.39607 -10.21138 -10.01472 -9.67333 -8.89795 -8.29325 -8.19973 -7.06787 -5.91439 -3.94293 3.35468 3.42843 3.48261 4.20887 4.49413 4.74070 4.83809 5.08621 5.29119 5.39972 5.49093 5.63312 5.67846 5.73247 5.81377 5.90626 5.92896 6.00250 6.12369 6.26447 6.33040 6.51546 6.59065 6.82981 6.98259 7.14363 7.23633 7.30144 7.51692 7.84739 7.97966 8.39052 8.69839 8.76214 9.13574 9.70880 11.15648 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053084 B = 0.006892 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.343757 B = 4061.935593 C = 4279.899072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.210 3.790 3 H 0.030 0.970 4 C -0.492 4.492 5 H 0.061 0.939 6 C 0.053 3.947 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.687 5.687 13 C 0.077 3.923 14 C 0.068 3.932 15 H 0.056 0.944 16 C -0.128 4.128 17 C -0.123 4.123 18 C 0.033 3.967 19 N -0.516 5.516 20 C 0.011 3.989 21 H 0.005 0.995 22 H 0.086 0.914 23 H 0.026 0.974 24 H 0.258 0.742 25 H 0.332 0.668 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -3.061 14.185 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.102 3.898 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.079 0.921 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.319 5.319 13 C -0.054 4.054 14 C -0.041 4.041 15 H 0.075 0.925 16 C -0.167 4.167 17 C -0.161 4.161 18 C -0.095 4.095 19 N -0.240 5.240 20 C -0.138 4.138 21 H 0.024 0.976 22 H 0.105 0.895 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.151 0.849 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.679 -2.799 13.636 14.022 hybrid contribution 0.116 -0.464 -0.372 0.605 sum 1.795 -3.262 13.265 13.777 Atomic orbital electron populations 1.22388 1.00750 0.99096 1.00278 1.19153 0.89612 0.94306 0.86748 0.95183 1.21224 1.29848 1.12251 0.89722 0.92052 1.24963 0.95445 0.95246 0.99007 1.69906 1.37560 1.23299 1.23071 0.86476 0.78472 0.79638 0.82996 1.19803 1.21258 1.21215 1.60947 1.58087 1.09469 1.03354 1.21868 0.98426 0.95096 0.89968 1.22509 0.95367 0.91142 0.95050 0.92542 1.22450 0.99502 0.99510 0.95207 1.22456 1.00468 0.95046 0.98091 1.23219 1.00421 0.96853 0.88990 1.64610 1.48025 1.03946 1.07427 1.22696 0.97029 0.91824 1.02227 0.97585 0.89531 0.95489 0.93234 0.84910 0.91939 0.95854 0.91777 0.90828 0.91527 0.90896 0.94246 0.90503 0.95985 0.92064 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.94 37.16 0.33 -3.86 16 2 C 0.21 5.46 2.57 -68.87 -0.18 5.29 16 3 H 0.03 0.86 7.80 -51.93 -0.40 0.45 16 4 C -0.49 -13.95 8.84 -34.44 -0.30 -14.26 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.81 -0.09 1.42 16 7 N -0.90 -26.31 11.32 55.43 0.63 -25.68 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.69 -15.16 5.61 -107.95 -0.61 -15.77 16 13 C 0.08 1.46 5.00 -3.82 -0.02 1.44 16 14 C 0.07 1.05 2.84 -66.64 -0.19 0.87 16 15 H 0.06 0.91 7.74 -51.93 -0.40 0.51 16 16 C -0.13 -1.61 6.57 -25.38 -0.17 -1.77 16 17 C -0.12 -1.37 7.06 -24.87 -0.18 -1.54 16 18 C 0.03 0.40 6.56 -1.90 -0.01 0.39 16 19 N -0.52 -7.75 4.81 -230.79 -1.11 -8.86 16 20 C 0.01 0.16 8.94 60.06 0.54 0.69 16 21 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 23 H 0.03 0.65 8.13 -51.92 -0.42 0.23 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.33 7.14 5.71 -39.29 -0.22 6.92 16 26 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 27 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.92 7.69 -51.93 -0.40 0.53 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.45 7.96 -51.93 -0.41 0.04 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.02 0.29 8.01 -51.93 -0.42 -0.12 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.55 5.68 -51.93 -0.29 1.26 16 LS Contribution 279.79 15.07 4.22 4.22 Total: -1.00 -29.16 279.79 -8.31 -37.47 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.14 Total: 3.10 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.27 Total: -11.33 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -1.09 Total: -50.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.16 -8.31 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.591 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds