Wall clock time and date at job start Sun Mar 29 2020 21:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.50701 * 109.47125 * 239.99751 * 2 1 3 5 5 H 1.07998 * 120.00342 * 239.99654 * 4 2 1 6 6 C 1.37886 * 119.99789 * 60.00058 * 4 2 1 7 7 N 1.31518 * 120.00016 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46867 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46759 * 119.99877 * 8 6 4 11 11 H 1.48494 * 109.47144 * 240.00177 * 8 6 4 12 12 N 1.46895 * 109.47235 * 120.00233 * 2 1 3 13 13 C 1.46906 * 110.99789 * 274.99821 * 12 2 1 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.90601 * 63.90275 * 14 13 12 16 16 C 1.53991 * 109.91612 * 185.00248 * 14 13 12 17 17 C 1.54594 * 105.14090 * 120.58152 * 16 14 13 18 18 C 1.54931 * 102.92243 * 21.95405 * 17 16 14 19 19 N 1.47902 * 109.92032 * 302.59200 * 14 13 12 20 20 C 1.46900 * 110.99790 * 94.80212 * 19 14 13 21 21 H 1.09002 * 109.47368 * 300.00021 * 1 2 3 22 22 H 1.09003 * 109.47249 * 60.00430 * 1 2 3 23 23 H 1.09009 * 109.47420 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99643 * 180.02562 * 7 6 4 25 25 H 1.00902 * 111.00273 * 38.95343 * 12 2 1 26 26 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 27 27 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 28 28 H 1.09004 * 110.30641 * 239.49475 * 16 14 13 29 29 H 1.09004 * 110.30920 * 1.66229 * 16 14 13 30 30 H 1.08998 * 110.72227 * 140.31556 * 17 16 14 31 31 H 1.08999 * 110.72421 * 263.59884 * 17 16 14 32 32 H 1.09002 * 110.66536 * 81.02231 * 18 17 16 33 33 H 1.08995 * 110.67166 * 203.98623 * 18 17 16 34 34 H 1.08999 * 109.47403 * 60.00491 * 20 19 14 35 35 H 1.09005 * 109.46723 * 179.97438 * 20 19 14 36 36 H 1.09003 * 109.47135 * 299.99899 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5951 -0.5332 3.5744 15 1 3.6169 -0.8712 3.4022 16 6 2.5468 0.3821 4.8119 17 6 1.6193 -0.3425 5.8142 18 6 1.6751 -1.8151 5.3357 19 7 1.7181 -1.6903 3.8563 20 6 2.2472 -2.9143 3.2398 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.7089 1.1613 -3.4844 25 1 1.4495 -1.4980 1.4100 26 1 2.7588 1.0461 2.1182 27 1 1.0870 0.6163 2.5525 28 1 3.5444 0.4983 5.2356 29 1 2.1316 1.3546 4.5472 30 1 2.0037 -0.2522 6.8301 31 1 0.6029 0.0458 5.7492 32 1 2.5748 -2.3062 5.7066 33 1 0.7841 -2.3568 5.6529 34 1 3.2397 -3.1225 3.6394 35 1 1.5835 -3.7497 3.4631 36 1 2.3112 -2.7790 2.1601 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219415405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:55 Heat of formation + Delta-G solvation = -16.782321 kcal Electronic energy + Delta-G solvation = -14718.622893 eV Core-core repulsion = 12429.582231 eV Total energy + Delta-G solvation = -2289.040662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19717 -37.42199 -34.48732 -33.08025 -31.68939 -28.86889 -27.23800 -26.58906 -24.54184 -22.35193 -21.66654 -21.00455 -18.40978 -17.17961 -16.80286 -16.35252 -15.91811 -15.33549 -14.85275 -14.52750 -14.26440 -13.70836 -13.61977 -13.58515 -13.14672 -12.92289 -12.68708 -12.63312 -12.31334 -12.19135 -12.08420 -11.97331 -11.74192 -11.55417 -11.36233 -10.97125 -10.48064 -9.35320 -8.88778 -8.08432 -6.19897 1.42579 1.43601 1.56569 2.45031 3.11434 3.19448 3.56426 3.82229 3.98666 4.12105 4.37277 4.42169 4.55006 4.60856 4.66037 4.74668 4.80522 4.85008 4.91418 4.96265 5.00098 5.07878 5.14679 5.18400 5.29689 5.34636 5.44739 5.69852 5.83181 6.04317 6.17406 6.29953 6.69971 6.88780 6.98524 7.50359 8.97587 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053084 B = 0.006892 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.343757 B = 4061.935593 C = 4279.899072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.686 5.686 13 C 0.079 3.921 14 C 0.073 3.927 15 H 0.049 0.951 16 C -0.125 4.125 17 C -0.116 4.116 18 C 0.033 3.967 19 N -0.535 5.535 20 C 0.015 3.985 21 H 0.020 0.980 22 H 0.061 0.939 23 H 0.028 0.972 24 H 0.261 0.739 25 H 0.336 0.664 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -3.929 15.376 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.317 5.317 13 C -0.051 4.051 14 C -0.036 4.036 15 H 0.067 0.933 16 C -0.164 4.164 17 C -0.154 4.154 18 C -0.094 4.094 19 N -0.260 5.260 20 C -0.134 4.134 21 H 0.039 0.961 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.156 0.844 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.018 -3.673 14.851 15.431 hybrid contribution 0.001 -0.178 -0.702 0.725 sum 2.019 -3.851 14.149 14.802 Atomic orbital electron populations 1.22191 1.00243 0.98935 0.99709 1.18942 0.89897 0.92638 0.88048 0.98404 1.21488 1.30254 1.12358 0.91079 0.92771 1.25766 0.95488 0.95911 1.01999 1.70031 1.38199 1.24370 1.23900 0.85428 0.78056 0.78560 0.79071 1.19272 1.20538 1.20697 1.60852 1.57698 1.09839 1.03360 1.21916 0.97900 0.94909 0.90418 1.22378 0.94650 0.91871 0.94675 0.93319 1.22447 1.01057 0.98722 0.94184 1.22465 1.00009 0.93936 0.99009 1.23306 1.01471 0.97797 0.86833 1.64551 1.47967 1.03794 1.09691 1.22611 0.98018 0.92232 1.00517 0.96107 0.92003 0.95277 0.93024 0.84426 0.92852 0.96719 0.89955 0.91149 0.88804 0.91311 0.93074 0.89478 0.95094 0.90522 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.75 8.94 71.98 0.64 -7.11 16 2 C 0.21 11.39 2.57 44.17 0.11 11.50 16 3 H 0.00 -0.12 7.80 -2.39 -0.02 -0.14 16 4 C -0.51 -29.54 8.84 25.60 0.23 -29.32 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.35 5.30 84.66 0.45 0.80 16 7 N -0.92 -54.81 11.32 21.45 0.24 -54.57 16 8 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.69 -30.71 5.61 -495.46 -2.78 -33.49 16 13 C 0.08 3.01 5.00 86.30 0.43 3.44 16 14 C 0.07 2.20 2.84 45.06 0.13 2.32 16 15 H 0.05 1.53 7.74 -2.39 -0.02 1.51 16 16 C -0.13 -2.88 6.57 31.47 0.21 -2.67 16 17 C -0.12 -2.24 7.06 31.80 0.22 -2.02 16 18 C 0.03 0.71 6.56 86.65 0.57 1.28 16 19 N -0.54 -15.24 4.81 -884.08 -4.25 -19.50 16 20 C 0.01 0.41 8.94 127.69 1.14 1.55 16 21 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 22 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 23 H 0.03 1.42 8.13 -2.38 -0.02 1.40 16 24 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.34 14.59 5.71 -89.69 -0.51 14.07 16 26 H 0.05 2.09 8.05 -2.39 -0.02 2.07 16 27 H 0.01 0.58 7.44 -2.38 -0.02 0.56 16 28 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 1.66 7.69 -2.38 -0.02 1.64 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.03 0.78 8.01 -2.39 -0.02 0.76 16 35 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 2.19 5.68 -2.39 -0.01 2.18 16 Total: -1.00 -62.16 279.79 -0.11 -62.27 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.52 Total: 18.53 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.13 Total: -20.23 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -6.79 Total: -107.55 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.16 -0.11 -62.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.488 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds