Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86794 * 120.00296 * 2 1 4 4 H 1.48501 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47242 * 300.00393 * 3 2 1 6 6 H 1.48509 * 109.46906 * 59.99916 * 3 2 1 7 7 C 1.40054 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00280 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99593 * 5.09348 * 9 7 2 11 11 N 1.34774 * 120.00192 * 185.09241 * 9 7 2 12 12 C 1.46497 * 120.00307 * 174.61755 * 11 9 7 13 13 C 1.53001 * 109.46981 * 276.17866 * 12 11 9 14 14 O 1.42896 * 109.47232 * 65.86025 * 13 12 11 15 15 C 1.46504 * 119.99868 * 354.61747 * 11 9 7 16 16 C 1.53777 * 113.61364 * 223.38688 * 15 11 9 17 17 C 1.53957 * 87.01892 * 220.04966 * 16 15 11 18 18 C 1.53775 * 113.61366 * 125.77746 * 15 11 9 19 19 H 0.97002 * 119.99697 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46778 * 36.17326 * 12 11 9 21 21 H 1.08994 * 109.47469 * 156.17220 * 12 11 9 22 22 H 1.08998 * 109.46556 * 185.85898 * 13 12 11 23 23 H 1.08997 * 109.46803 * 305.85905 * 13 12 11 24 24 H 0.96700 * 114.00450 * 180.02562 * 14 13 12 25 25 H 1.08999 * 112.84907 * 354.58002 * 15 11 9 26 26 H 1.09005 * 113.61659 * 334.56535 * 16 15 11 27 27 H 1.08997 * 113.61937 * 105.47040 * 16 15 11 28 28 H 1.09002 * 113.53381 * 270.81237 * 17 16 15 29 29 H 1.08998 * 113.66699 * 139.93532 * 17 16 15 30 30 H 1.08998 * 113.61466 * 254.53060 * 18 15 11 31 31 H 1.08997 * 113.61418 * 25.34860 * 18 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3964 -1.2124 6 1 1.8820 2.3964 1.2126 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0617 -2.4825 -0.0936 11 7 1.9449 -3.6455 0.1025 12 6 1.2082 -4.9061 0.2213 13 6 0.8246 -5.1367 1.6844 14 8 -0.1069 -4.1344 2.0963 15 6 3.4099 -3.6511 0.0958 16 6 4.0176 -4.7612 -0.7777 17 6 5.0684 -4.9483 0.3319 18 6 4.0287 -4.3698 1.3062 19 1 -0.4850 0.8401 -0.0004 20 1 0.3054 -4.8581 -0.3877 21 1 1.8358 -5.7277 -0.1236 22 1 0.3690 -6.1213 1.7896 23 1 1.7174 -5.0809 2.3072 24 1 -0.3943 -4.2185 3.0158 25 1 3.8361 -2.6655 -0.0916 26 1 3.3622 -5.6224 -0.9080 27 1 4.4337 -4.3987 -1.7177 28 1 5.9490 -4.3179 0.2082 29 1 5.3173 -5.9913 0.5274 30 1 4.4537 -3.6918 2.0463 31 1 3.3758 -5.1227 1.7477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222130408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = -56.550574 kcal Electronic energy + Delta-G solvation = -14988.626072 eV Core-core repulsion = 12464.309173 eV Total energy + Delta-G solvation = -2524.316899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.08081 -36.51945 -35.72344 -32.78953 -31.99900 -28.91007 -25.91605 -25.21485 -24.03777 -22.04979 -19.24905 -18.70517 -17.29682 -16.35556 -15.51794 -14.99064 -14.68860 -14.19361 -13.74717 -13.29234 -12.57660 -12.39672 -12.27337 -11.83616 -11.38314 -11.18904 -11.14294 -10.91690 -10.72406 -10.53701 -10.15655 -9.97677 -9.96085 -9.70226 -9.18892 -8.73632 -7.34068 -7.04947 -6.05192 -4.49596 3.18474 3.26278 3.30085 4.16922 4.59880 4.70565 4.96927 5.08367 5.11074 5.33787 5.49282 5.72424 5.83165 5.84085 5.94719 6.06730 6.20339 6.21002 6.23342 6.31215 6.48047 6.56933 6.70567 6.91026 7.56931 7.77651 8.27199 8.41055 8.49447 9.15540 9.62229 10.74398 10.96863 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.012295 C = 0.009456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.117113 B = 2276.736135 C = 2960.407670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.901 3.099 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.563 3.437 10 O -0.554 6.554 11 N -0.628 5.628 12 C 0.123 3.877 13 C 0.060 3.940 14 O -0.534 6.534 15 C 0.141 3.859 16 C -0.162 4.162 17 C -0.140 4.140 18 C -0.162 4.162 19 H 0.265 0.735 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.357 0.643 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.769 -8.324 2.570 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.367 3.633 10 O -0.434 6.434 11 N -0.364 5.364 12 C -0.002 4.002 13 C -0.020 4.020 14 O -0.335 6.335 15 C 0.034 3.966 16 C -0.200 4.200 17 C -0.178 4.178 18 C -0.201 4.201 19 H 0.076 0.924 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.200 0.800 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.952 -7.987 1.866 10.752 hybrid contribution 0.573 0.460 0.725 1.032 sum 7.525 -7.527 2.591 10.954 Atomic orbital electron populations 1.70047 1.06914 1.26757 1.35993 1.25688 0.94542 1.00024 0.92814 0.86423 0.80515 0.82325 0.78100 1.18884 1.20284 1.20315 1.21007 0.93303 0.89515 1.54484 0.91375 1.18148 0.86981 0.82031 0.76094 1.90609 1.14095 1.85812 1.52907 1.48014 1.03757 1.05935 1.78654 1.21017 0.97049 0.88164 0.93925 1.22792 0.91622 0.89720 0.97878 1.87005 1.63071 1.52563 1.30868 1.22384 0.82297 0.98527 0.93371 1.23533 0.98083 1.00443 0.97985 1.22705 0.97018 1.00359 0.97698 1.23586 0.98044 1.00361 0.98137 0.92424 0.90808 0.91336 0.95225 0.94395 0.79974 0.86446 0.90377 0.91705 0.90473 0.92080 0.91825 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.68 11.84 55.55 0.66 -23.03 16 2 C 0.09 2.53 5.50 -17.36 -0.10 2.43 16 3 Si 0.90 20.62 29.56 -169.99 -5.02 15.60 16 4 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.55 -15.75 8.86 -35.63 -0.32 -16.07 16 8 H 0.07 1.80 5.68 -52.49 -0.30 1.50 16 9 C 0.56 16.47 7.09 -12.99 -0.09 16.38 16 10 O -0.55 -18.44 13.59 -9.64 -0.13 -18.57 16 11 N -0.63 -14.56 2.70 -166.84 -0.45 -15.01 16 12 C 0.12 2.48 5.23 -4.04 -0.02 2.45 16 13 C 0.06 1.08 7.21 37.16 0.27 1.35 16 14 O -0.53 -11.75 12.00 -50.07 -0.60 -12.35 16 15 C 0.14 2.68 4.10 -67.12 -0.27 2.41 16 16 C -0.16 -2.46 7.58 -25.83 -0.20 -2.66 16 17 C -0.14 -1.83 8.09 -25.83 -0.21 -2.04 16 18 C -0.16 -2.55 7.54 -25.92 -0.20 -2.74 16 19 H 0.26 7.43 8.29 -40.82 -0.34 7.09 16 20 H 0.07 1.69 7.54 -51.93 -0.39 1.30 16 21 H 0.07 1.12 5.78 -51.93 -0.30 0.82 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.65 5.87 -51.93 -0.30 0.34 16 24 H 0.36 5.85 9.12 45.56 0.42 6.27 16 25 H 0.12 2.41 5.55 -51.93 -0.29 2.12 16 26 H 0.08 1.15 5.99 -51.93 -0.31 0.84 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.20 5.32 -51.93 -0.28 0.92 16 LS Contribution 252.05 15.07 3.80 3.80 Total: -1.00 -36.14 252.05 -5.88 -42.03 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.00 Total: 6.02 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.13 Total: 1.51 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.21 Total: -38.04 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.73 Total: -30.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -36.14 -5.88 -42.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222130408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.522 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds