Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86794 * 120.00296 * 2 1 4 4 H 1.48501 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47242 * 300.00393 * 3 2 1 6 6 H 1.48509 * 109.46906 * 59.99916 * 3 2 1 7 7 C 1.40054 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00280 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99593 * 5.09348 * 9 7 2 11 11 N 1.34774 * 120.00192 * 185.09241 * 9 7 2 12 12 C 1.46497 * 120.00307 * 174.61755 * 11 9 7 13 13 C 1.53001 * 109.46981 * 276.17866 * 12 11 9 14 14 O 1.42896 * 109.47232 * 65.86025 * 13 12 11 15 15 C 1.46504 * 119.99868 * 354.61747 * 11 9 7 16 16 C 1.53777 * 113.61364 * 223.38688 * 15 11 9 17 17 C 1.53957 * 87.01892 * 220.04966 * 16 15 11 18 18 C 1.53775 * 113.61366 * 125.77746 * 15 11 9 19 19 H 0.97002 * 119.99697 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46778 * 36.17326 * 12 11 9 21 21 H 1.08994 * 109.47469 * 156.17220 * 12 11 9 22 22 H 1.08998 * 109.46556 * 185.85898 * 13 12 11 23 23 H 1.08997 * 109.46803 * 305.85905 * 13 12 11 24 24 H 0.96700 * 114.00450 * 180.02562 * 14 13 12 25 25 H 1.08999 * 112.84907 * 354.58002 * 15 11 9 26 26 H 1.09005 * 113.61659 * 334.56535 * 16 15 11 27 27 H 1.08997 * 113.61937 * 105.47040 * 16 15 11 28 28 H 1.09002 * 113.53381 * 270.81237 * 17 16 15 29 29 H 1.08998 * 113.66699 * 139.93532 * 17 16 15 30 30 H 1.08998 * 113.61466 * 254.53060 * 18 15 11 31 31 H 1.08997 * 113.61418 * 25.34860 * 18 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3964 -1.2124 6 1 1.8820 2.3964 1.2126 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0617 -2.4825 -0.0936 11 7 1.9449 -3.6455 0.1025 12 6 1.2082 -4.9061 0.2213 13 6 0.8246 -5.1367 1.6844 14 8 -0.1069 -4.1344 2.0963 15 6 3.4099 -3.6511 0.0958 16 6 4.0176 -4.7612 -0.7777 17 6 5.0684 -4.9483 0.3319 18 6 4.0287 -4.3698 1.3062 19 1 -0.4850 0.8401 -0.0004 20 1 0.3054 -4.8581 -0.3877 21 1 1.8358 -5.7277 -0.1236 22 1 0.3690 -6.1213 1.7896 23 1 1.7174 -5.0809 2.3072 24 1 -0.3943 -4.2185 3.0158 25 1 3.8361 -2.6655 -0.0916 26 1 3.3622 -5.6224 -0.9080 27 1 4.4337 -4.3987 -1.7177 28 1 5.9490 -4.3179 0.2082 29 1 5.3173 -5.9913 0.5274 30 1 4.4537 -3.6918 2.0463 31 1 3.3758 -5.1227 1.7477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222130408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = -84.449301 kcal Electronic energy + Delta-G solvation = -14989.835852 eV Core-core repulsion = 12464.309173 eV Total energy + Delta-G solvation = -2525.526679 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63120 -38.28174 -37.47749 -34.76734 -34.01207 -30.65445 -27.95441 -26.48261 -25.43139 -23.75056 -21.02172 -20.19948 -18.97432 -18.08570 -17.55411 -16.59002 -16.22278 -15.81759 -15.47910 -14.85782 -14.54747 -14.01235 -13.68669 -13.32845 -13.13389 -13.02125 -12.72378 -12.69205 -12.19486 -12.18309 -11.95896 -11.73000 -11.25014 -11.12152 -10.88251 -10.68919 -9.55382 -8.89665 -8.19659 -6.73954 1.38464 1.39575 1.55993 2.26203 2.57813 2.91913 3.54255 3.69769 3.85440 3.94851 4.09363 4.22800 4.32648 4.47442 4.55385 4.63378 4.85802 4.88469 4.97515 5.08159 5.19137 5.22080 5.32092 5.40491 5.61837 5.92659 6.23420 6.56386 6.96163 7.07882 7.59600 8.62465 8.82550 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.012295 C = 0.009456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.117113 B = 2276.736135 C = 2960.407670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.991 3.009 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.546 3.454 10 O -0.611 6.611 11 N -0.629 5.629 12 C 0.118 3.882 13 C 0.059 3.941 14 O -0.580 6.580 15 C 0.111 3.889 16 C -0.153 4.153 17 C -0.116 4.116 18 C -0.156 4.156 19 H 0.270 0.730 20 H 0.035 0.965 21 H 0.112 0.888 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.376 0.624 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.519 -9.202 3.070 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.610 4.610 8 H 0.103 0.897 9 C 0.351 3.649 10 O -0.495 6.495 11 N -0.363 5.363 12 C -0.006 4.006 13 C -0.020 4.020 14 O -0.385 6.385 15 C 0.007 3.993 16 C -0.192 4.192 17 C -0.154 4.154 18 C -0.195 4.195 19 H 0.079 0.921 20 H 0.053 0.947 21 H 0.130 0.870 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.223 0.777 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.765 -8.927 2.384 13.444 hybrid contribution -0.279 0.633 0.564 0.892 sum 9.487 -8.294 2.948 12.941 Atomic orbital electron populations 1.70237 1.09429 1.28291 1.37507 1.26932 0.95449 1.04728 0.91501 0.85084 0.79492 0.75994 0.78395 1.16928 1.19497 1.19523 1.21536 0.94383 0.90338 1.54749 0.89662 1.18505 0.86600 0.84123 0.75708 1.90553 1.16359 1.87259 1.55363 1.47791 1.05635 1.05385 1.77523 1.21262 0.96083 0.88069 0.95176 1.22899 0.92036 0.90637 0.96385 1.86960 1.64173 1.54501 1.32838 1.22752 0.79791 0.99292 0.97512 1.23489 0.98475 0.98755 0.98434 1.22636 0.96073 1.02201 0.94503 1.23537 0.98598 1.00054 0.97290 0.92051 0.94659 0.87047 0.91288 0.92783 0.77732 0.88677 0.89546 0.91312 0.89192 0.89154 0.91986 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.84 11.84 21.84 0.26 -52.58 16 2 C 0.03 1.63 5.50 85.31 0.47 2.10 16 3 Si 0.99 42.78 29.56 68.60 2.03 44.81 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.57 -33.87 8.86 24.83 0.22 -33.65 16 8 H 0.09 4.55 5.68 -2.91 -0.02 4.54 16 9 C 0.55 33.14 7.09 86.36 0.61 33.75 16 10 O -0.61 -42.77 13.59 9.87 0.13 -42.64 16 11 N -0.63 -29.41 2.70 -799.98 -2.16 -31.57 16 12 C 0.12 4.69 5.23 86.38 0.45 5.14 16 13 C 0.06 2.07 7.21 71.98 0.52 2.59 16 14 O -0.58 -25.97 12.00 -134.79 -1.62 -27.59 16 15 C 0.11 4.11 4.10 45.51 0.19 4.29 16 16 C -0.15 -4.21 7.58 31.18 0.24 -3.97 16 17 C -0.12 -2.53 8.09 31.18 0.25 -2.28 16 18 C -0.16 -4.45 7.54 31.12 0.23 -4.21 16 19 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 20 H 0.03 1.66 7.54 -2.39 -0.02 1.65 16 21 H 0.11 3.36 5.78 -2.39 -0.01 3.35 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.05 1.71 5.87 -2.39 -0.01 1.70 16 24 H 0.38 12.48 9.12 -74.06 -0.68 11.81 16 25 H 0.10 3.88 5.55 -2.39 -0.01 3.87 16 26 H 0.09 2.23 5.99 -2.38 -0.01 2.22 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.31 5.32 -2.39 -0.01 2.29 16 Total: -1.00 -83.19 252.05 2.30 -80.89 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.48 Total: 24.92 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 3.18 Total: 3.76 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -1.90 Total: -84.15 kcal Atomic # 8 Polarization: -68.74 SS G_CDS: -1.48 Total: -70.22 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -83.19 2.30 -80.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222130408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.562 kcal (2) G-P(sol) polarization free energy of solvation -83.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds