Wall clock time and date at job start Sun Mar 29 2020 21:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.50747 * 2 1 4 4 C 1.53056 * 109.49010 * 239.94170 * 2 1 3 5 5 N 1.46953 * 109.36571 * 181.63596 * 4 2 1 6 6 C 1.46899 * 111.00236 * 183.19295 * 5 4 2 7 7 C 1.46954 * 110.88290 * 59.31944 * 5 4 2 8 8 C 1.53056 * 109.36346 * 300.68189 * 7 5 4 9 9 N 1.46956 * 109.36524 * 58.40368 * 8 7 5 10 10 C 1.46898 * 111.00097 * 176.81298 * 9 8 7 11 11 C 1.53002 * 109.46569 * 293.79577 * 10 9 8 12 12 C 1.50705 * 109.46559 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00494 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99532 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00301 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99681 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47295 * 60.00311 * 16 14 12 18 18 H 1.48506 * 109.46879 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47135 * 300.00072 * 16 14 12 20 20 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47174 * 300.05573 * 1 2 3 22 22 H 1.09008 * 109.46659 * 60.05722 * 1 2 3 23 23 H 1.08997 * 109.49056 * 301.60461 * 4 2 1 24 24 H 1.09004 * 109.48435 * 61.66600 * 4 2 1 25 25 H 1.08999 * 109.47240 * 59.99517 * 6 5 4 26 26 H 1.08997 * 109.47318 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.46488 * 299.99815 * 6 5 4 28 28 H 1.09002 * 109.48555 * 60.64731 * 7 5 4 29 29 H 1.08998 * 109.48990 * 180.71711 * 7 5 4 30 30 H 1.09004 * 109.48435 * 178.36797 * 8 7 5 31 31 H 1.08997 * 109.49056 * 298.42936 * 8 7 5 32 32 H 1.08996 * 109.47293 * 53.79573 * 10 9 8 33 33 H 1.08999 * 109.47129 * 173.79765 * 10 9 8 34 34 H 1.09005 * 109.47237 * 299.99707 * 11 10 9 35 35 H 1.08991 * 109.47469 * 59.99984 * 11 10 9 36 36 H 0.97003 * 120.00291 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7227 -1.2488 5 7 3.5097 -0.7555 -1.2264 6 6 4.0412 -1.3753 -2.4475 7 6 3.9999 -1.4492 -0.0273 8 6 3.4892 -0.7265 1.2215 9 7 2.0202 -0.6939 1.1992 10 6 1.4888 -0.0739 2.4203 11 6 1.8115 -0.9609 3.6245 12 6 1.2657 -0.3251 4.8771 13 1 0.7415 0.6174 4.8201 14 6 1.4356 -0.9468 6.0960 15 7 2.0744 -2.0943 6.1656 16 14 0.7598 -0.1585 7.6488 17 1 -0.7123 -0.0058 7.5261 18 1 1.0729 -1.0194 8.8176 19 1 1.3819 1.1767 7.8372 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5147 0.8894 22 1 -0.3633 0.5130 -0.8906 23 1 1.6544 -1.7418 -1.2627 24 1 1.7022 -0.1930 -2.1394 25 1 3.7176 -0.8022 -3.3164 26 1 5.1302 -1.3871 -2.4046 27 1 3.6700 -2.3970 -2.5274 28 1 3.6359 -2.4766 -0.0273 29 1 5.0899 -1.4492 -0.0272 30 1 3.8277 -1.2562 2.1121 31 1 3.8755 0.2926 1.2354 32 1 1.9450 0.9063 2.5583 33 1 0.4082 0.0377 2.3304 34 1 1.3552 -1.9411 3.4865 35 1 2.8920 -1.0725 3.7143 36 1 2.1936 -2.5319 7.0230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225144614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:19 Heat of formation + Delta-G solvation = 2.868351 kcal Electronic energy + Delta-G solvation = -14680.413573 eV Core-core repulsion = 12392.225029 eV Total energy + Delta-G solvation = -2288.188545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18359 -35.62433 -33.15131 -32.08575 -30.06138 -27.46880 -26.83166 -24.42842 -23.26151 -21.48517 -20.28389 -19.21202 -16.46749 -15.49662 -15.25405 -14.97365 -14.52154 -14.49467 -13.80738 -13.55992 -13.03204 -12.47395 -12.23220 -12.10721 -11.78610 -11.69384 -11.40545 -11.16179 -10.91529 -10.80725 -10.67021 -10.49732 -10.21746 -9.67884 -9.28755 -9.08578 -8.30492 -8.26204 -7.64894 -5.97087 -3.99335 3.35125 3.39353 3.41788 4.04020 4.37973 4.55336 5.05243 5.13751 5.31002 5.38710 5.43101 5.50899 5.63013 5.65666 5.70818 5.80119 5.83642 5.89720 6.11382 6.15017 6.29031 6.35932 6.41936 6.51903 6.60542 7.03864 7.10480 7.13913 7.57944 7.64017 7.84405 7.94054 8.11923 8.46864 9.07795 9.64087 11.14312 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053296 B = 0.006644 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.237579 B = 4213.184421 C = 4578.309577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 H 0.041 0.959 4 C 0.065 3.935 5 N -0.548 5.548 6 C 0.027 3.973 7 C 0.058 3.942 8 C 0.057 3.943 9 N -0.536 5.536 10 C 0.059 3.941 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.018 0.982 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 2.103 -14.440 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.063 4.063 5 N -0.273 5.273 6 C -0.122 4.122 7 C -0.070 4.070 8 C -0.071 4.071 9 N -0.261 5.261 10 C -0.068 4.068 11 C -0.008 4.008 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.507 1.964 -14.317 14.530 hybrid contribution -0.294 0.365 0.908 1.021 sum 1.214 2.329 -13.410 13.664 Atomic orbital electron populations 1.21875 0.94379 1.02553 1.01571 1.21604 0.95063 0.95771 0.90441 0.94095 1.22191 0.86919 0.99582 0.97656 1.62157 1.08895 1.53743 1.02477 1.22320 1.00318 0.96981 0.92574 1.22215 0.99188 0.96158 0.89479 1.22155 0.88302 0.99252 0.97412 1.62287 1.07674 1.53835 1.02339 1.22414 0.98925 0.96212 0.89202 1.19083 0.96894 0.95107 0.89763 1.21167 1.36161 1.06672 0.92054 0.92882 1.24986 0.95329 0.94920 0.99026 1.69960 1.41864 1.16198 1.25304 0.86665 0.79483 0.79200 0.82674 1.20241 1.21290 1.20305 0.91916 0.91633 0.92837 0.94131 0.91039 0.91719 0.91587 0.95805 0.94044 0.90764 0.89113 0.94775 0.96338 0.91460 0.95840 0.96587 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.89 37.16 0.33 -1.75 16 2 C 0.08 1.28 2.56 -67.65 -0.17 1.11 16 3 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 4 C 0.06 0.91 4.90 -3.77 -0.02 0.89 16 5 N -0.55 -7.73 4.97 -242.76 -1.21 -8.93 16 6 C 0.03 0.29 9.60 60.06 0.58 0.87 16 7 C 0.06 0.87 5.62 -3.77 -0.02 0.85 16 8 C 0.06 1.02 5.41 -3.76 -0.02 1.00 16 9 N -0.54 -10.18 4.53 -226.48 -1.03 -11.21 16 10 C 0.06 1.28 4.66 -3.82 -0.02 1.26 16 11 C 0.03 0.76 4.91 -27.88 -0.14 0.63 16 12 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.06 0.99 6.15 -51.93 -0.32 0.67 16 22 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 27 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.09 1.78 6.34 -51.93 -0.33 1.45 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.07 1.43 5.73 -51.93 -0.30 1.13 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.02 0.44 6.49 -51.93 -0.34 0.10 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -30.25 281.34 -8.49 -38.73 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -6.32 Total: -4.45 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 0.11 Total: -8.80 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -1.49 Total: -46.52 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.25 -8.49 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225144614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.601 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds