Wall clock time and date at job start Sun Mar 29 2020 21:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.50747 * 2 1 4 4 C 1.53056 * 109.49010 * 239.94170 * 2 1 3 5 5 N 1.46953 * 109.36571 * 181.63596 * 4 2 1 6 6 C 1.46899 * 111.00236 * 183.19295 * 5 4 2 7 7 C 1.46954 * 110.88290 * 59.31944 * 5 4 2 8 8 C 1.53056 * 109.36346 * 300.68189 * 7 5 4 9 9 N 1.46956 * 109.36524 * 58.40368 * 8 7 5 10 10 C 1.46898 * 111.00097 * 176.81298 * 9 8 7 11 11 C 1.53002 * 109.46569 * 293.79577 * 10 9 8 12 12 C 1.50705 * 109.46559 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00494 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99532 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00301 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99681 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47295 * 60.00311 * 16 14 12 18 18 H 1.48506 * 109.46879 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47135 * 300.00072 * 16 14 12 20 20 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 21 21 H 1.08991 * 109.47174 * 300.05573 * 1 2 3 22 22 H 1.09008 * 109.46659 * 60.05722 * 1 2 3 23 23 H 1.08997 * 109.49056 * 301.60461 * 4 2 1 24 24 H 1.09004 * 109.48435 * 61.66600 * 4 2 1 25 25 H 1.08999 * 109.47240 * 59.99517 * 6 5 4 26 26 H 1.08997 * 109.47318 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.46488 * 299.99815 * 6 5 4 28 28 H 1.09002 * 109.48555 * 60.64731 * 7 5 4 29 29 H 1.08998 * 109.48990 * 180.71711 * 7 5 4 30 30 H 1.09004 * 109.48435 * 178.36797 * 8 7 5 31 31 H 1.08997 * 109.49056 * 298.42936 * 8 7 5 32 32 H 1.08996 * 109.47293 * 53.79573 * 10 9 8 33 33 H 1.08999 * 109.47129 * 173.79765 * 10 9 8 34 34 H 1.09005 * 109.47237 * 299.99707 * 11 10 9 35 35 H 1.08991 * 109.47469 * 59.99984 * 11 10 9 36 36 H 0.97003 * 120.00291 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7227 -1.2488 5 7 3.5097 -0.7555 -1.2264 6 6 4.0412 -1.3753 -2.4475 7 6 3.9999 -1.4492 -0.0273 8 6 3.4892 -0.7265 1.2215 9 7 2.0202 -0.6939 1.1992 10 6 1.4888 -0.0739 2.4203 11 6 1.8115 -0.9609 3.6245 12 6 1.2657 -0.3251 4.8771 13 1 0.7415 0.6174 4.8201 14 6 1.4356 -0.9468 6.0960 15 7 2.0744 -2.0943 6.1656 16 14 0.7598 -0.1585 7.6488 17 1 -0.7123 -0.0058 7.5261 18 1 1.0729 -1.0194 8.8176 19 1 1.3819 1.1767 7.8372 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5147 0.8894 22 1 -0.3633 0.5130 -0.8906 23 1 1.6544 -1.7418 -1.2627 24 1 1.7022 -0.1930 -2.1394 25 1 3.7176 -0.8022 -3.3164 26 1 5.1302 -1.3871 -2.4046 27 1 3.6700 -2.3970 -2.5274 28 1 3.6359 -2.4766 -0.0273 29 1 5.0899 -1.4492 -0.0272 30 1 3.8277 -1.2562 2.1121 31 1 3.8755 0.2926 1.2354 32 1 1.9450 0.9063 2.5583 33 1 0.4082 0.0377 2.3304 34 1 1.3552 -1.9411 3.4865 35 1 2.8920 -1.0725 3.7143 36 1 2.1936 -2.5319 7.0230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225144614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:19 Heat of formation + Delta-G solvation = -18.610601 kcal Electronic energy + Delta-G solvation = -14681.344970 eV Core-core repulsion = 12392.225029 eV Total energy + Delta-G solvation = -2289.119942 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49758 -37.01717 -35.13897 -33.52128 -31.82248 -29.00887 -27.94982 -26.17411 -24.74482 -22.77979 -22.03044 -20.58371 -18.57398 -16.89652 -16.69029 -16.40697 -16.20242 -15.66165 -15.26329 -15.09293 -14.60471 -14.08457 -13.68723 -13.33752 -13.28785 -12.95417 -12.80033 -12.76018 -12.58472 -12.39924 -12.08716 -11.99011 -11.86393 -11.44909 -11.18760 -11.12478 -10.52479 -9.38113 -9.17225 -8.19732 -6.31314 1.40200 1.43662 1.51560 2.40520 2.96110 3.02468 3.13561 3.86241 4.01320 4.06202 4.26258 4.33274 4.42456 4.52245 4.58652 4.62806 4.68403 4.78162 4.81208 4.85851 4.94787 5.00490 5.02285 5.06219 5.16161 5.36308 5.46105 5.65522 5.78482 5.98495 6.02943 6.16935 6.34164 6.34917 6.85410 7.37751 8.92324 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053296 B = 0.006644 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.237579 B = 4213.184421 C = 4578.309577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.036 0.964 4 C 0.069 3.931 5 N -0.558 5.558 6 C 0.027 3.973 7 C 0.067 3.933 8 C 0.058 3.942 9 N -0.547 5.547 10 C 0.077 3.923 11 C 0.038 3.962 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.267 1.267 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.086 0.914 23 H 0.034 0.966 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.013 0.987 33 H 0.073 0.927 34 H -0.009 1.009 35 H -0.008 1.008 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 3.125 -15.605 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 H 0.054 0.946 4 C -0.059 4.059 5 N -0.283 5.283 6 C -0.121 4.121 7 C -0.062 4.062 8 C -0.071 4.071 9 N -0.273 5.273 10 C -0.051 4.051 11 C 0.001 3.999 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.192 1.192 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.105 0.895 23 H 0.053 0.947 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.009 0.991 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.007 2.992 -15.513 15.831 hybrid contribution -0.106 0.025 1.214 1.219 sum 0.902 3.017 -14.298 14.641 Atomic orbital electron populations 1.21847 0.93045 1.02462 1.02546 1.21767 0.96211 0.95417 0.89756 0.94574 1.22189 0.86990 0.99282 0.97428 1.62176 1.08968 1.54051 1.03057 1.22402 1.00968 0.97186 0.91518 1.22089 1.00151 0.95118 0.88795 1.22104 0.87869 0.98974 0.98116 1.62238 1.08294 1.54265 1.02475 1.22047 0.99333 0.94747 0.88939 1.18900 0.94897 0.94350 0.91756 1.21596 1.36482 1.07138 0.93201 0.92233 1.25963 0.95403 0.95362 1.02842 1.70104 1.42980 1.17732 1.26392 0.85482 0.79161 0.78403 0.77871 1.19047 1.20749 1.19212 0.92488 0.92956 0.89550 0.94744 0.88209 0.89896 0.90509 0.95570 0.94933 0.88907 0.91909 0.95229 0.96844 0.90842 0.99089 0.98937 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.89 71.98 0.64 -3.15 16 2 C 0.08 2.36 2.56 44.92 0.12 2.47 16 3 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.07 1.78 4.90 86.31 0.42 2.20 16 5 N -0.56 -14.51 4.97 -921.95 -4.58 -19.09 16 6 C 0.03 0.51 9.60 127.69 1.23 1.74 16 7 C 0.07 1.96 5.62 86.31 0.49 2.45 16 8 C 0.06 2.12 5.41 86.31 0.47 2.59 16 9 N -0.55 -21.06 4.53 -870.46 -3.94 -25.00 16 10 C 0.08 3.40 4.66 86.30 0.40 3.81 16 11 C 0.04 2.12 4.91 29.85 0.15 2.27 16 12 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.13 5.46 84.66 0.46 0.60 16 15 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 16 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 21 H 0.05 1.53 6.15 -2.39 -0.01 1.51 16 22 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.36 8.13 -2.39 -0.02 2.34 16 30 H 0.06 2.61 6.34 -2.38 -0.02 2.60 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.01 0.60 8.12 -2.39 -0.02 0.58 16 33 H 0.07 3.15 5.73 -2.39 -0.01 3.14 16 34 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 35 H -0.01 -0.45 6.49 -2.39 -0.02 -0.47 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.74 281.34 -0.59 -66.33 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.02 Total: 5.14 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.60 Total: -16.67 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -8.23 Total: -101.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.74 -0.59 -66.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225144614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.717 kcal (2) G-P(sol) polarization free energy of solvation -65.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds