Wall clock time and date at job start Sun Mar 29 2020 21:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53048 * 109.48842 * 120.05809 * 2 1 3 5 5 N 1.46961 * 109.36779 * 178.36743 * 4 2 1 6 6 C 1.46895 * 111.00606 * 176.81311 * 5 4 2 7 7 C 1.46956 * 110.87882 * 300.68567 * 5 4 2 8 8 C 1.53052 * 109.36679 * 59.31800 * 7 5 4 9 9 N 1.46951 * 109.49114 * 239.95116 * 2 1 3 10 10 C 1.46898 * 110.99950 * 56.84698 * 9 2 1 11 11 C 1.53001 * 109.47509 * 170.00128 * 10 9 2 12 12 C 1.50691 * 109.47426 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00342 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00244 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00376 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47330 * 89.99812 * 16 14 12 18 18 H 1.48494 * 109.47538 * 210.00160 * 16 14 12 19 19 H 1.48500 * 109.46924 * 330.00030 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 23 23 H 1.08994 * 109.49486 * 298.33887 * 4 2 1 24 24 H 1.09003 * 109.48870 * 58.40896 * 4 2 1 25 25 H 1.08997 * 109.47608 * 179.84402 * 6 5 4 26 26 H 1.09007 * 109.47161 * 299.85154 * 6 5 4 27 27 H 1.09005 * 109.46891 * 59.84488 * 6 5 4 28 28 H 1.08994 * 109.48997 * 299.34978 * 7 5 4 29 29 H 1.09002 * 109.50450 * 179.29577 * 7 5 4 30 30 H 1.09005 * 109.48889 * 181.63151 * 8 7 5 31 31 H 1.09003 * 109.50766 * 61.57598 * 8 7 5 32 32 H 1.09008 * 109.47017 * 289.99852 * 10 9 2 33 33 H 1.08997 * 109.47349 * 49.99766 * 10 9 2 34 34 H 1.09008 * 109.46755 * 299.99884 * 11 10 9 35 35 H 1.08997 * 109.47111 * 59.99492 * 11 10 9 36 36 H 0.97003 * 120.00304 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 3.5096 -0.7554 1.2265 6 6 4.0411 -1.3754 2.4475 7 6 3.9999 -1.4491 0.0273 8 6 3.4894 -0.7263 -1.2215 9 7 2.0203 -0.6937 -1.1991 10 6 1.4889 -0.0736 -2.4202 11 6 2.2070 -0.6532 -3.6406 12 6 1.6615 -0.0175 -4.8933 13 1 0.8809 0.7258 -4.8258 14 6 2.1595 -0.3842 -6.1256 15 7 3.1111 -1.2882 -6.2078 16 14 1.4838 0.4042 -7.6784 17 1 2.2719 1.6214 -7.9989 18 1 1.5801 -0.5586 -8.8047 19 1 0.0621 0.7769 -7.4659 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5131 -0.8904 22 1 -0.3634 0.5146 0.8896 23 1 1.7021 -0.1932 2.1393 24 1 1.6544 -1.7419 1.2625 25 1 5.1301 -1.3892 2.4037 26 1 3.7197 -0.8008 3.3163 27 1 3.6678 -2.3963 2.5288 28 1 3.6360 -2.4764 0.0271 29 1 5.0899 -1.4494 0.0271 30 1 3.8278 -1.2559 -2.1121 31 1 3.8756 0.2929 -1.2356 32 1 0.4209 -0.2779 -2.4962 33 1 1.6509 1.0035 -2.3809 34 1 3.2751 -0.4489 -3.5646 35 1 2.0450 -1.7303 -3.6799 36 1 3.4618 -1.5459 -7.0747 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225144653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:22 Heat of formation + Delta-G solvation = 3.004868 kcal Electronic energy + Delta-G solvation = -14708.828750 eV Core-core repulsion = 12420.646126 eV Total energy + Delta-G solvation = -2288.182625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.19007 -35.64674 -33.20263 -32.08377 -29.97780 -27.46809 -26.81240 -24.41580 -23.39247 -21.44505 -20.31725 -19.09558 -16.51531 -15.46803 -15.14980 -14.94888 -14.52087 -14.48523 -13.89068 -13.60465 -12.94893 -12.50282 -12.22942 -12.12844 -11.77391 -11.67302 -11.38228 -11.18136 -10.94306 -10.80522 -10.63689 -10.44157 -10.18196 -9.82265 -9.27430 -9.06246 -8.33169 -8.24653 -7.63515 -5.99225 -4.01251 3.32910 3.39072 3.42520 4.05987 4.39132 4.54926 5.06215 5.15623 5.33728 5.37103 5.43857 5.51942 5.64613 5.67524 5.74794 5.81085 5.84666 5.89710 6.12453 6.20191 6.29373 6.38509 6.44273 6.55453 6.59232 6.97798 7.12620 7.16217 7.56542 7.65531 7.82925 7.88208 8.06927 8.44823 9.05393 9.62394 11.12259 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051749 B = 0.006789 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.938600 B = 4123.138484 C = 4556.398992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.042 0.958 4 C 0.065 3.935 5 N -0.548 5.548 6 C 0.027 3.973 7 C 0.057 3.943 8 C 0.054 3.946 9 N -0.537 5.537 10 C 0.063 3.937 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 0.486 14.427 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.060 0.940 4 C -0.063 4.063 5 N -0.273 5.273 6 C -0.122 4.122 7 C -0.071 4.071 8 C -0.074 4.074 9 N -0.263 5.263 10 C -0.064 4.064 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.404 0.387 14.303 14.314 hybrid contribution -0.275 0.397 -0.903 1.025 sum -0.679 0.785 13.400 13.440 Atomic orbital electron populations 1.21822 0.94434 1.02351 1.01568 1.21629 0.95004 0.95841 0.90415 0.93984 1.22185 0.86996 0.99490 0.97648 1.62159 1.08825 1.53785 1.02496 1.22321 1.00345 0.96926 0.92594 1.22242 0.99259 0.96063 0.89513 1.22233 0.88213 0.99508 0.97430 1.62309 1.07936 1.53729 1.02321 1.22326 0.99598 0.95358 0.89079 1.19241 0.95468 0.96867 0.90086 1.21186 1.20625 1.22862 0.91252 0.92775 1.24988 0.95083 0.95123 0.99105 1.69963 1.27394 1.31396 1.24617 0.86590 0.79412 0.79064 0.82912 1.20709 1.21213 1.19877 0.92045 0.91868 0.92834 0.91061 0.94218 0.91571 0.91748 0.95854 0.94180 0.90742 0.88488 0.94650 0.91745 0.96265 0.96198 0.95791 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.87 37.16 0.33 -1.69 16 2 C 0.08 1.29 2.52 -67.66 -0.17 1.11 16 3 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.91 4.90 -3.77 -0.02 0.90 16 5 N -0.55 -7.85 4.97 -242.76 -1.21 -9.06 16 6 C 0.03 0.30 9.60 60.06 0.58 0.87 16 7 C 0.06 0.88 5.62 -3.77 -0.02 0.86 16 8 C 0.05 1.00 4.93 -3.76 -0.02 0.98 16 9 N -0.54 -10.23 4.67 -226.49 -1.06 -11.29 16 10 C 0.06 1.37 4.40 -3.82 -0.02 1.35 16 11 C 0.02 0.54 4.24 -27.89 -0.12 0.42 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.94 6.59 -51.93 -0.34 0.60 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 30 H 0.10 1.98 5.99 -51.93 -0.31 1.67 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.38 6.86 -51.92 -0.36 1.03 16 33 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.02 0.54 6.26 -51.92 -0.33 0.22 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 280.94 15.07 4.23 4.23 Total: -1.00 -30.02 280.94 -8.55 -38.57 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.37 Total: -4.21 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 0.13 Total: -8.78 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.53 Total: -46.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.02 -8.55 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225144653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.574 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds