Wall clock time and date at job start Sun Mar 29 2020 21:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49021 * 2 1 4 4 C 1.53048 * 109.48842 * 120.05809 * 2 1 3 5 5 N 1.46961 * 109.36779 * 178.36743 * 4 2 1 6 6 C 1.46895 * 111.00606 * 176.81311 * 5 4 2 7 7 C 1.46956 * 110.87882 * 300.68567 * 5 4 2 8 8 C 1.53052 * 109.36679 * 59.31800 * 7 5 4 9 9 N 1.46951 * 109.49114 * 239.95116 * 2 1 3 10 10 C 1.46898 * 110.99950 * 56.84698 * 9 2 1 11 11 C 1.53001 * 109.47509 * 170.00128 * 10 9 2 12 12 C 1.50691 * 109.47426 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00342 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00244 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00376 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47330 * 89.99812 * 16 14 12 18 18 H 1.48494 * 109.47538 * 210.00160 * 16 14 12 19 19 H 1.48500 * 109.46924 * 330.00030 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.04834 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.04816 * 1 2 3 23 23 H 1.08994 * 109.49486 * 298.33887 * 4 2 1 24 24 H 1.09003 * 109.48870 * 58.40896 * 4 2 1 25 25 H 1.08997 * 109.47608 * 179.84402 * 6 5 4 26 26 H 1.09007 * 109.47161 * 299.85154 * 6 5 4 27 27 H 1.09005 * 109.46891 * 59.84488 * 6 5 4 28 28 H 1.08994 * 109.48997 * 299.34978 * 7 5 4 29 29 H 1.09002 * 109.50450 * 179.29577 * 7 5 4 30 30 H 1.09005 * 109.48889 * 181.63151 * 8 7 5 31 31 H 1.09003 * 109.50766 * 61.57598 * 8 7 5 32 32 H 1.09008 * 109.47017 * 289.99852 * 10 9 2 33 33 H 1.08997 * 109.47349 * 49.99766 * 10 9 2 34 34 H 1.09008 * 109.46755 * 299.99884 * 11 10 9 35 35 H 1.08997 * 109.47111 * 59.99492 * 11 10 9 36 36 H 0.97003 * 120.00304 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 3.5096 -0.7554 1.2265 6 6 4.0411 -1.3754 2.4475 7 6 3.9999 -1.4491 0.0273 8 6 3.4894 -0.7263 -1.2215 9 7 2.0203 -0.6937 -1.1991 10 6 1.4889 -0.0736 -2.4202 11 6 2.2070 -0.6532 -3.6406 12 6 1.6615 -0.0175 -4.8933 13 1 0.8809 0.7258 -4.8258 14 6 2.1595 -0.3842 -6.1256 15 7 3.1111 -1.2882 -6.2078 16 14 1.4838 0.4042 -7.6784 17 1 2.2719 1.6214 -7.9989 18 1 1.5801 -0.5586 -8.8047 19 1 0.0621 0.7769 -7.4659 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5131 -0.8904 22 1 -0.3634 0.5146 0.8896 23 1 1.7021 -0.1932 2.1393 24 1 1.6544 -1.7419 1.2625 25 1 5.1301 -1.3892 2.4037 26 1 3.7197 -0.8008 3.3163 27 1 3.6678 -2.3963 2.5288 28 1 3.6360 -2.4764 0.0271 29 1 5.0899 -1.4494 0.0271 30 1 3.8278 -1.2559 -2.1121 31 1 3.8756 0.2929 -1.2356 32 1 0.4209 -0.2779 -2.4962 33 1 1.6509 1.0035 -2.3809 34 1 3.2751 -0.4489 -3.5646 35 1 2.0450 -1.7303 -3.6799 36 1 3.4618 -1.5459 -7.0747 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225144653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:21 Heat of formation + Delta-G solvation = -18.392219 kcal Electronic energy + Delta-G solvation = -14709.756598 eV Core-core repulsion = 12420.646126 eV Total energy + Delta-G solvation = -2289.110472 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52823 -37.05683 -35.14762 -33.57705 -31.71687 -29.02733 -27.92573 -26.15194 -24.92756 -22.71315 -22.03246 -20.52338 -18.61299 -16.86839 -16.67337 -16.28477 -16.20732 -15.76381 -15.39087 -15.10735 -14.54800 -14.08938 -13.66572 -13.31527 -13.22292 -12.97490 -12.81288 -12.80238 -12.58116 -12.37026 -12.14846 -11.97994 -11.87521 -11.46088 -11.18330 -11.12241 -10.54645 -9.37458 -9.18083 -8.20946 -6.32233 1.39941 1.41476 1.52699 2.39953 2.96754 3.02471 3.12560 3.86543 4.02335 4.08369 4.27337 4.33447 4.42421 4.52206 4.57663 4.62937 4.71729 4.76792 4.79101 4.87228 4.97027 4.99205 5.01872 5.05072 5.15058 5.35035 5.43949 5.63867 5.77129 5.98646 6.01333 6.15775 6.33241 6.33548 6.83915 7.36817 8.91169 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051749 B = 0.006789 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.938600 B = 4123.138484 C = 4556.398992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.033 0.967 4 C 0.070 3.930 5 N -0.560 5.560 6 C 0.027 3.973 7 C 0.067 3.933 8 C 0.057 3.943 9 N -0.544 5.544 10 C 0.081 3.919 11 C 0.031 3.969 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.014 0.986 34 H -0.001 1.001 35 H -0.007 1.007 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 1.182 15.639 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.051 0.949 4 C -0.058 4.058 5 N -0.285 5.285 6 C -0.120 4.120 7 C -0.061 4.061 8 C -0.072 4.072 9 N -0.270 5.270 10 C -0.046 4.046 11 C -0.007 4.007 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.791 3.209 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.187 1.187 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.103 0.897 23 H 0.118 0.882 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.018 0.982 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.164 1.086 15.545 15.626 hybrid contribution -0.005 0.166 -1.228 1.240 sum -1.169 1.252 14.317 14.419 Atomic orbital electron populations 1.21796 0.92787 1.02557 1.02505 1.21806 0.96399 0.95262 0.89791 0.94924 1.22188 0.86916 0.99375 0.97359 1.62167 1.09071 1.54165 1.03064 1.22399 1.00915 0.97243 0.91485 1.22094 1.00065 0.95205 0.88757 1.22133 0.88070 0.98788 0.98176 1.62306 1.08201 1.54011 1.02473 1.21971 0.99137 0.94695 0.88825 1.19055 0.94725 0.94959 0.91937 1.21610 1.21006 1.23272 0.92479 0.92293 1.25951 0.95208 0.95529 1.02853 1.70099 1.28612 1.32700 1.25716 0.85425 0.79140 0.78179 0.78168 1.19777 1.20621 1.18710 0.92155 0.93198 0.89656 0.88242 0.94466 0.90636 0.89910 0.95414 0.94648 0.89174 0.91540 0.95837 0.91430 0.96732 0.98249 0.98892 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.87 71.98 0.64 -2.99 16 2 C 0.08 2.34 2.52 44.92 0.11 2.45 16 3 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.07 1.79 4.90 86.31 0.42 2.21 16 5 N -0.56 -14.87 4.97 -921.94 -4.58 -19.45 16 6 C 0.03 0.52 9.60 127.69 1.23 1.75 16 7 C 0.07 2.02 5.62 86.31 0.49 2.50 16 8 C 0.06 2.16 4.93 86.31 0.43 2.58 16 9 N -0.54 -20.99 4.67 -870.48 -4.07 -25.06 16 10 C 0.08 3.61 4.40 86.30 0.38 3.99 16 11 C 0.03 1.67 4.24 29.85 0.13 1.80 16 12 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 16 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.05 1.43 6.59 -2.39 -0.02 1.41 16 22 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 26 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 30 H 0.07 2.90 5.99 -2.38 -0.01 2.88 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 2.94 6.86 -2.38 -0.02 2.92 16 33 H 0.01 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.00 -0.04 6.26 -2.38 -0.01 -0.06 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -65.18 280.94 -0.81 -65.99 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.01 Total: 5.46 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 4.51 Total: -16.63 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -8.36 Total: -101.61 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.18 -0.81 -65.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225144653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.595 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds