Wall clock time and date at job start Sun Mar 29 2020 21:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86793 * 120.00344 * 2 1 4 4 H 1.48499 * 109.46975 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99294 * 3 2 1 6 6 H 1.48507 * 109.47295 * 149.99589 * 3 2 1 7 7 C 1.40053 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99613 * 0.02562 * 7 2 1 10 10 O 1.21681 * 120.00209 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99617 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99577 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46820 * 180.02562 * 12 11 9 14 14 O 1.42899 * 109.47113 * 64.99987 * 13 12 11 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.97009 * 119.99276 * 0.02562 * 1 2 3 20 20 H 0.96993 * 119.99950 * 0.02562 * 11 9 7 21 21 H 1.09000 * 109.47148 * 60.00417 * 12 11 9 22 22 H 1.09002 * 109.47641 * 299.99771 * 12 11 9 23 23 H 1.09007 * 109.46516 * 304.99920 * 13 12 11 24 24 H 1.09004 * 109.47113 * 185.00388 * 13 12 11 25 25 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 26 26 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 27 27 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 28 28 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 30 30 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 31 31 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0462 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5384 1.4400 0.7002 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 1.2161 -4.9164 0.0000 13 6 2.2103 -6.0795 0.0007 14 8 2.9517 -6.0715 1.2224 15 6 3.9139 -7.1231 1.3250 16 6 4.6436 -7.0174 2.6657 17 6 6.1474 -6.7374 2.6312 18 6 5.6366 -8.1266 3.0188 19 1 -0.4849 0.8402 -0.0004 20 1 2.9187 -3.6478 0.0009 21 1 0.5899 -4.9739 -0.8903 22 1 0.5891 -4.9744 0.8897 23 1 2.8951 -5.9725 -0.8406 24 1 1.6683 -7.0209 -0.0893 25 1 4.6340 -7.0375 0.5112 26 1 3.4075 -8.0863 1.2623 27 1 4.0683 -6.5788 3.4809 28 1 6.6168 -6.6280 1.6536 29 1 6.5616 -6.1143 3.4239 30 1 5.7147 -8.4173 4.0664 31 1 5.7697 -8.9317 2.2962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228906018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:50 Heat of formation + Delta-G solvation = -68.945003 kcal Electronic energy + Delta-G solvation = -13719.255065 eV Core-core repulsion = 11194.400704 eV Total energy + Delta-G solvation = -2524.854362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.49219 -37.26518 -36.35532 -33.23510 -32.19194 -29.07734 -26.76759 -25.71818 -22.53141 -22.08845 -20.66872 -19.59575 -17.16637 -16.83970 -15.90198 -15.43005 -15.23582 -14.44940 -14.15652 -13.85649 -13.39314 -12.87311 -12.40319 -12.10752 -11.68480 -11.41405 -11.18674 -11.11330 -10.92352 -10.74526 -10.52096 -10.35701 -10.24475 -10.15406 -9.40572 -8.78779 -7.53885 -7.39024 -6.11613 -4.56171 3.18662 3.25100 3.29172 3.49535 3.86561 4.16765 4.66383 4.70067 4.76726 4.93152 4.97143 5.24318 5.30007 5.45474 5.50041 5.56978 5.60391 5.74199 5.75021 5.87417 5.95157 6.10764 6.42063 6.57715 7.38310 7.50406 8.03572 8.19651 8.41692 9.09651 9.64112 10.67823 10.86927 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037387 B = 0.005907 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.742744 B = 4738.827985 C = 5335.504764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.762 5.762 12 C 0.135 3.865 13 C 0.055 3.945 14 O -0.376 6.376 15 C 0.092 3.908 16 C -0.150 4.150 17 C -0.177 4.177 18 C -0.177 4.177 19 H 0.267 0.733 20 H 0.383 0.617 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.405 -12.939 2.339 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.467 6.467 11 N -0.419 5.419 12 C 0.010 3.990 13 C -0.022 4.022 14 O -0.295 6.295 15 C 0.015 3.985 16 C -0.169 4.169 17 C -0.213 4.213 18 C -0.214 4.214 19 H 0.078 0.922 20 H 0.214 0.786 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.278 -12.709 2.484 15.930 hybrid contribution 0.985 0.529 -0.197 1.136 sum 10.264 -12.180 2.287 16.091 Atomic orbital electron populations 1.70036 1.07053 1.27114 1.35681 1.25709 0.94600 1.00244 0.92650 0.86381 0.80178 0.81467 0.78750 1.19797 1.20493 1.18930 1.20893 0.93579 0.89447 1.54274 0.91473 1.18217 0.87179 0.82530 0.76257 1.90586 1.14135 1.86966 1.55045 1.46032 1.08674 1.04603 1.82545 1.20900 0.93305 0.83553 1.01289 1.22839 0.94218 0.98753 0.86393 1.88008 1.52251 1.50564 1.38710 1.21953 0.90880 0.90457 0.95192 1.22150 0.91888 1.03681 0.99145 1.23056 0.96441 0.98630 1.03222 1.22959 1.03861 0.92351 1.02265 0.92207 0.78594 0.91898 0.92591 0.93141 0.92880 0.93451 0.93318 0.86757 0.88692 0.88603 0.88569 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.73 11.83 55.55 0.66 -23.08 16 2 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 3 Si 0.91 20.66 29.56 -169.99 -5.02 15.64 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -15.98 9.54 -35.63 -0.34 -16.32 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.55 16.50 7.75 -12.98 -0.10 16.40 16 10 O -0.58 -19.62 15.02 5.21 0.08 -19.54 16 11 N -0.76 -18.14 5.50 -61.72 -0.34 -18.48 16 12 C 0.13 2.71 6.06 -4.04 -0.02 2.69 16 13 C 0.05 0.83 6.07 37.16 0.23 1.05 16 14 O -0.38 -6.06 10.29 -35.23 -0.36 -6.43 16 15 C 0.09 1.12 6.22 37.16 0.23 1.35 16 16 C -0.15 -1.72 6.06 -90.62 -0.55 -2.27 16 17 C -0.18 -1.76 10.18 -26.73 -0.27 -2.03 16 18 C -0.18 -1.57 10.25 -26.73 -0.27 -1.84 16 19 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 20 H 0.38 8.24 8.45 -40.82 -0.35 7.90 16 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.53 7.88 -51.93 -0.41 0.12 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 274.92 15.07 4.14 4.14 Total: -1.00 -35.23 274.92 -6.57 -41.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.52 Total: 4.50 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.20 Total: 1.45 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.32 Total: -41.56 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.28 Total: -25.97 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.23 -6.57 -41.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228906018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.143 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds