Wall clock time and date at job start Sun Mar 29 2020 21:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86793 * 120.00344 * 2 1 4 4 H 1.48499 * 109.46975 * 269.99647 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99294 * 3 2 1 6 6 H 1.48507 * 109.47295 * 149.99589 * 3 2 1 7 7 C 1.40053 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99613 * 0.02562 * 7 2 1 10 10 O 1.21681 * 120.00209 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99617 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99577 * 180.02562 * 11 9 7 13 13 C 1.53009 * 109.46820 * 180.02562 * 12 11 9 14 14 O 1.42899 * 109.47113 * 64.99987 * 13 12 11 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.97009 * 119.99276 * 0.02562 * 1 2 3 20 20 H 0.96993 * 119.99950 * 0.02562 * 11 9 7 21 21 H 1.09000 * 109.47148 * 60.00417 * 12 11 9 22 22 H 1.09002 * 109.47641 * 299.99771 * 12 11 9 23 23 H 1.09007 * 109.46516 * 304.99920 * 13 12 11 24 24 H 1.09004 * 109.47113 * 185.00388 * 13 12 11 25 25 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 26 26 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 27 27 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 28 28 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 30 30 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 31 31 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0462 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5384 1.4400 0.7002 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2749 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 1.2161 -4.9164 0.0000 13 6 2.2103 -6.0795 0.0007 14 8 2.9517 -6.0715 1.2224 15 6 3.9139 -7.1231 1.3250 16 6 4.6436 -7.0174 2.6657 17 6 6.1474 -6.7374 2.6312 18 6 5.6366 -8.1266 3.0188 19 1 -0.4849 0.8402 -0.0004 20 1 2.9187 -3.6478 0.0009 21 1 0.5899 -4.9739 -0.8903 22 1 0.5891 -4.9744 0.8897 23 1 2.8951 -5.9725 -0.8406 24 1 1.6683 -7.0209 -0.0893 25 1 4.6340 -7.0375 0.5112 26 1 3.4075 -8.0863 1.2623 27 1 4.0683 -6.5788 3.4809 28 1 6.6168 -6.6280 1.6536 29 1 6.5616 -6.1143 3.4239 30 1 5.7147 -8.4173 4.0664 31 1 5.7697 -8.9317 2.2962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228906018.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:50 Heat of formation + Delta-G solvation = -95.264363 kcal Electronic energy + Delta-G solvation = -13720.396358 eV Core-core repulsion = 11194.400704 eV Total energy + Delta-G solvation = -2525.995655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.76164 -39.04192 -37.51605 -35.17205 -34.39176 -30.72527 -28.31645 -27.32715 -23.65388 -23.22596 -21.73562 -21.51554 -19.24415 -17.93392 -17.50546 -16.99110 -16.61544 -15.92853 -15.64476 -15.24940 -15.12087 -14.40831 -14.00180 -13.59084 -13.24450 -12.97493 -12.71189 -12.62498 -12.39325 -12.31990 -12.02159 -11.93978 -11.32143 -11.16317 -10.92626 -10.42829 -9.87377 -9.46767 -8.28751 -6.85345 1.40405 1.42621 1.58012 2.25993 2.46552 2.55122 2.98088 3.17626 3.62762 3.85292 3.98220 4.05416 4.20497 4.27161 4.36450 4.46675 4.59476 4.72188 4.77494 4.78745 4.94673 5.02547 5.24971 5.26594 5.32125 5.88134 6.22283 6.25728 6.34527 6.86830 7.55479 8.49283 8.67848 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037387 B = 0.005907 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.742744 B = 4738.827985 C = 5335.504764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.751 5.751 12 C 0.131 3.869 13 C 0.068 3.932 14 O -0.408 6.408 15 C 0.090 3.910 16 C -0.177 4.177 17 C -0.181 4.181 18 C -0.155 4.155 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.715 -13.287 2.111 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.405 5.405 12 C 0.006 3.994 13 C -0.008 4.008 14 O -0.328 6.328 15 C 0.014 3.986 16 C -0.195 4.195 17 C -0.218 4.218 18 C -0.191 4.191 19 H 0.085 0.915 20 H 0.228 0.772 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.639 -13.117 2.257 17.681 hybrid contribution 0.270 0.542 -0.097 0.613 sum 11.909 -12.575 2.160 17.453 Atomic orbital electron populations 1.70201 1.09595 1.28963 1.36517 1.27016 0.95558 1.05037 0.91126 0.84981 0.78666 0.74848 0.79525 1.18347 1.19680 1.17356 1.21442 0.94696 0.90185 1.54812 0.89594 1.18659 0.86863 0.84515 0.76092 1.90536 1.16196 1.88081 1.57480 1.45742 1.09268 1.04649 1.80887 1.21049 0.94468 0.83900 0.99989 1.22678 0.93777 0.97484 0.86871 1.87959 1.53338 1.52498 1.39030 1.22154 0.90510 0.90028 0.95933 1.22148 0.92545 1.06354 0.98497 1.23149 0.95169 0.99754 1.03714 1.23061 1.00772 0.91947 1.03364 0.91532 0.77189 0.92217 0.95027 0.91258 0.89629 0.92129 0.91621 0.88787 0.88070 0.88568 0.87528 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.87 11.83 21.84 0.26 -51.61 16 2 C 0.03 1.58 5.50 85.31 0.47 2.05 16 3 Si 1.00 42.01 29.56 68.60 2.03 44.03 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.57 -33.98 9.54 24.83 0.24 -33.74 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.53 32.68 7.75 86.36 0.67 33.35 16 10 O -0.64 -44.42 15.02 -4.29 -0.06 -44.48 16 11 N -0.75 -36.17 5.50 -467.39 -2.57 -38.74 16 12 C 0.13 5.31 6.06 86.38 0.52 5.84 16 13 C 0.07 1.95 6.07 71.99 0.44 2.39 16 14 O -0.41 -12.69 10.29 -148.98 -1.53 -14.23 16 15 C 0.09 2.00 6.22 71.98 0.45 2.45 16 16 C -0.18 -3.83 6.06 -10.79 -0.07 -3.89 16 17 C -0.18 -3.28 10.18 30.60 0.31 -2.97 16 18 C -0.15 -2.34 10.25 30.60 0.31 -2.03 16 19 H 0.27 15.60 8.29 -92.70 -0.77 14.83 16 20 H 0.39 16.89 8.45 -92.71 -0.78 16.11 16 21 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16 24 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.06 1.18 7.88 -2.39 -0.02 1.16 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.10 1.69 8.03 -2.39 -0.02 1.67 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.59 274.92 1.79 -76.80 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.33 Total: 24.78 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 3.34 Total: 3.44 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -2.31 Total: -90.35 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -1.60 Total: -58.71 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -78.59 1.79 -76.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228906018.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.467 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds