Wall clock time and date at job start Sun Mar 29 2020 22:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 119.99784 * 2 1 4 4 H 1.48511 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47125 * 299.99737 * 3 2 1 6 6 H 1.48496 * 109.47298 * 60.00159 * 3 2 1 7 7 C 1.40047 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99739 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00013 * 359.97438 * 9 7 2 11 11 N 1.34784 * 120.00157 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99988 * 180.02562 * 11 9 7 13 13 H 1.08993 * 110.02104 * 33.60361 * 12 11 9 14 14 C 1.53877 * 110.07067 * 272.18543 * 12 11 9 15 15 C 1.54463 * 106.68421 * 240.85264 * 14 12 11 16 16 C 1.54890 * 104.10368 * 23.34437 * 15 14 12 17 17 C 1.54265 * 110.03167 * 154.99933 * 12 11 9 18 18 H 1.09004 * 110.59809 * 214.45605 * 17 12 11 19 19 C 1.53000 * 110.48514 * 337.03922 * 17 12 11 20 20 O 1.42905 * 109.46967 * 181.22958 * 19 17 12 21 21 H 0.96993 * 119.99951 * 0.02562 * 1 2 3 22 22 H 0.96995 * 119.99710 * 359.97438 * 11 9 7 23 23 H 1.08999 * 110.03493 * 359.97438 * 14 12 11 24 24 H 1.09003 * 110.03187 * 121.36554 * 14 12 11 25 25 H 1.09003 * 110.40626 * 264.75463 * 15 14 12 26 26 H 1.09003 * 110.65885 * 142.05687 * 15 14 12 27 27 H 1.09002 * 110.75897 * 203.89231 * 16 15 14 28 28 H 1.09006 * 110.75292 * 80.70460 * 16 15 14 29 29 H 1.09002 * 109.47302 * 301.23072 * 19 17 12 30 30 H 1.08997 * 109.46938 * 61.23561 * 19 17 12 31 31 H 0.96709 * 113.99643 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0016 12 6 1.2166 -4.9164 0.0010 13 1 0.2921 -4.8132 -0.5668 14 6 0.9032 -5.3458 1.4450 15 6 1.6011 -6.7062 1.6645 16 6 2.7407 -6.7194 0.6155 17 6 2.0907 -6.0309 -0.6102 18 1 1.4757 -6.7400 -1.1645 19 6 3.1650 -5.4309 -1.5195 20 8 3.9427 -6.4821 -2.0958 21 1 -0.4850 0.8400 -0.0004 22 1 2.9191 -3.6477 0.0020 23 1 1.2964 -4.6105 2.1470 24 1 -0.1736 -5.4503 1.5781 25 1 0.9047 -7.5246 1.4816 26 1 2.0100 -6.7704 2.6729 27 1 3.0324 -7.7417 0.3748 28 1 3.5985 -6.1477 0.9699 29 1 2.6890 -4.8542 -2.3127 30 1 3.8130 -4.7783 -0.9345 31 1 4.6450 -6.1742 -2.6850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229001663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:28 Heat of formation + Delta-G solvation = -103.212837 kcal Electronic energy + Delta-G solvation = -14576.625217 eV Core-core repulsion = 12050.284891 eV Total energy + Delta-G solvation = -2526.340327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00683 -36.63875 -35.71345 -32.64308 -31.81695 -29.66666 -27.57202 -25.68386 -24.00095 -20.54430 -20.16645 -18.54022 -17.77649 -16.64778 -15.60475 -15.10956 -14.89131 -14.35739 -13.96463 -13.77287 -13.07673 -12.63000 -12.33417 -12.08355 -11.39241 -11.15386 -10.88007 -10.75096 -10.69080 -10.54603 -10.44255 -10.32885 -10.16257 -10.14515 -9.62966 -8.86802 -7.60558 -7.48795 -6.18878 -4.64653 3.11829 3.20124 3.24237 4.09587 4.34580 4.57722 4.85283 4.98584 5.00036 5.27366 5.55656 5.68779 5.77381 5.79796 5.97278 5.98813 6.05315 6.15176 6.21779 6.34552 6.38797 6.59078 6.72967 6.88503 7.42670 7.76341 7.92861 8.12927 8.33562 9.02232 9.54138 10.60167 10.79391 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038879 B = 0.008322 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.009526 B = 3363.831058 C = 3764.456824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.554 3.446 10 O -0.579 6.579 11 N -0.762 5.762 12 C 0.159 3.841 13 H 0.079 0.921 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.098 4.098 18 H 0.081 0.919 19 C 0.086 3.914 20 O -0.579 6.579 21 H 0.267 0.733 22 H 0.378 0.622 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 -8.952 -0.547 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.462 6.462 11 N -0.418 5.418 12 C 0.052 3.948 13 H 0.097 0.903 14 C -0.171 4.171 15 C -0.163 4.163 16 C -0.148 4.148 17 C -0.117 4.117 18 H 0.100 0.900 19 C 0.008 3.992 20 O -0.384 6.384 21 H 0.078 0.922 22 H 0.212 0.788 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.445 -9.195 -0.191 10.687 hybrid contribution 1.253 1.235 -0.285 1.783 sum 6.698 -7.959 -0.476 10.413 Atomic orbital electron populations 1.70029 1.07022 1.27103 1.35475 1.25703 0.94604 1.00258 0.92652 0.86346 0.80476 0.81883 0.78212 1.18827 1.20184 1.20180 1.20919 0.93526 0.89487 1.54415 0.91540 1.18233 0.87248 0.82500 0.76198 1.90597 1.14082 1.86807 1.54710 1.46378 1.08392 1.04709 1.82346 1.21071 0.95260 0.83898 0.94557 0.90260 1.22664 1.00210 0.96139 0.98135 1.22411 0.97460 0.97793 0.98614 1.22449 0.97591 1.00163 0.94580 1.22237 0.96147 0.97751 0.95612 0.90023 1.22179 0.92577 0.88593 0.95807 1.86438 1.49821 1.35805 1.66334 0.92194 0.78850 0.91216 0.91992 0.92115 0.92131 0.91835 0.91738 0.93116 0.93255 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.00 11.83 55.55 0.66 -22.34 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.07 29.56 -169.99 -5.02 15.05 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -15.32 9.54 -35.63 -0.34 -15.66 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.55 15.58 7.74 -12.98 -0.10 15.48 16 10 O -0.58 -18.62 14.67 5.20 0.08 -18.54 16 11 N -0.76 -16.73 4.34 -54.13 -0.23 -16.97 16 12 C 0.16 3.07 3.11 -66.81 -0.21 2.86 16 13 H 0.08 1.74 7.56 -51.93 -0.39 1.35 16 14 C -0.13 -2.36 6.60 -25.51 -0.17 -2.53 16 15 C -0.13 -1.76 6.85 -24.97 -0.17 -1.93 16 16 C -0.11 -1.55 6.17 -24.74 -0.15 -1.70 16 17 C -0.10 -1.54 3.11 -88.96 -0.28 -1.82 16 18 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 19 C 0.09 1.28 5.64 37.16 0.21 1.49 16 20 O -0.58 -7.74 13.50 -35.23 -0.48 -8.21 16 21 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 22 H 0.38 7.39 6.45 -40.82 -0.26 7.13 16 23 H 0.07 1.37 7.92 -51.93 -0.41 0.96 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.72 6.26 -51.93 -0.33 0.39 16 31 H 0.37 3.31 9.12 45.56 0.42 3.73 16 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -33.88 259.81 -5.87 -39.74 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.48 Total: 8.83 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.30 Total: -1.47 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.42 Total: -39.31 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.40 Total: -26.75 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.88 -5.87 -39.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229001663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.471 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds