Wall clock time and date at job start Sun Mar 29 2020 22:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 119.99784 * 2 1 4 4 H 1.48511 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47125 * 299.99737 * 3 2 1 6 6 H 1.48496 * 109.47298 * 60.00159 * 3 2 1 7 7 C 1.40047 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99739 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00013 * 359.97438 * 9 7 2 11 11 N 1.34784 * 120.00157 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99988 * 180.02562 * 11 9 7 13 13 H 1.08993 * 110.02104 * 33.60361 * 12 11 9 14 14 C 1.53877 * 110.07067 * 272.18543 * 12 11 9 15 15 C 1.54463 * 106.68421 * 240.85264 * 14 12 11 16 16 C 1.54890 * 104.10368 * 23.34437 * 15 14 12 17 17 C 1.54265 * 110.03167 * 154.99933 * 12 11 9 18 18 H 1.09004 * 110.59809 * 214.45605 * 17 12 11 19 19 C 1.53000 * 110.48514 * 337.03922 * 17 12 11 20 20 O 1.42905 * 109.46967 * 181.22958 * 19 17 12 21 21 H 0.96993 * 119.99951 * 0.02562 * 1 2 3 22 22 H 0.96995 * 119.99710 * 359.97438 * 11 9 7 23 23 H 1.08999 * 110.03493 * 359.97438 * 14 12 11 24 24 H 1.09003 * 110.03187 * 121.36554 * 14 12 11 25 25 H 1.09003 * 110.40626 * 264.75463 * 15 14 12 26 26 H 1.09003 * 110.65885 * 142.05687 * 15 14 12 27 27 H 1.09002 * 110.75897 * 203.89231 * 16 15 14 28 28 H 1.09006 * 110.75292 * 80.70460 * 16 15 14 29 29 H 1.09002 * 109.47302 * 301.23072 * 19 17 12 30 30 H 1.08997 * 109.46938 * 61.23561 * 19 17 12 31 31 H 0.96709 * 113.99643 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0016 12 6 1.2166 -4.9164 0.0010 13 1 0.2921 -4.8132 -0.5668 14 6 0.9032 -5.3458 1.4450 15 6 1.6011 -6.7062 1.6645 16 6 2.7407 -6.7194 0.6155 17 6 2.0907 -6.0309 -0.6102 18 1 1.4757 -6.7400 -1.1645 19 6 3.1650 -5.4309 -1.5195 20 8 3.9427 -6.4821 -2.0958 21 1 -0.4850 0.8400 -0.0004 22 1 2.9191 -3.6477 0.0020 23 1 1.2964 -4.6105 2.1470 24 1 -0.1736 -5.4503 1.5781 25 1 0.9047 -7.5246 1.4816 26 1 2.0100 -6.7704 2.6729 27 1 3.0324 -7.7417 0.3748 28 1 3.5985 -6.1477 0.9699 29 1 2.6890 -4.8542 -2.3127 30 1 3.8130 -4.7783 -0.9345 31 1 4.6450 -6.1742 -2.6850 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229001663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:28 Heat of formation + Delta-G solvation = -130.000712 kcal Electronic energy + Delta-G solvation = -14577.786827 eV Core-core repulsion = 12050.284891 eV Total energy + Delta-G solvation = -2527.501936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.54828 -38.44631 -37.00871 -34.70532 -33.72991 -30.96759 -29.31593 -27.54351 -25.28823 -22.43805 -21.43793 -20.17064 -19.48551 -18.09007 -17.49607 -16.72121 -16.36250 -15.63113 -15.62130 -15.39079 -14.62043 -14.30352 -14.20277 -13.45583 -13.16208 -12.86928 -12.63704 -12.49154 -12.14520 -12.00884 -11.92798 -11.80417 -11.59233 -11.45887 -10.94982 -10.80393 -9.83936 -9.43745 -8.28785 -6.85247 1.39634 1.39871 1.57584 2.24136 2.47990 3.04865 3.28142 3.56423 3.70527 3.80882 4.08451 4.31121 4.45309 4.50790 4.59769 4.68621 4.74808 4.82637 4.93630 5.09924 5.19698 5.27701 5.31638 5.33618 5.48948 5.88905 6.24594 6.32949 6.87273 6.89692 7.56358 8.51137 8.68795 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038879 B = 0.008322 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.009526 B = 3363.831058 C = 3764.456824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.746 5.746 12 C 0.153 3.847 13 H 0.042 0.958 14 C -0.132 4.132 15 C -0.113 4.113 16 C -0.102 4.102 17 C -0.092 4.092 18 H 0.087 0.913 19 C 0.093 3.907 20 O -0.582 6.582 21 H 0.274 0.726 22 H 0.392 0.608 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -9.407 -0.404 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.519 6.519 11 N -0.401 5.401 12 C 0.047 3.953 13 H 0.061 0.939 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.112 4.112 18 H 0.106 0.894 19 C 0.015 3.985 20 O -0.390 6.390 21 H 0.083 0.917 22 H 0.228 0.772 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.917 -9.703 -0.059 12.524 hybrid contribution 0.492 1.298 -0.363 1.435 sum 8.410 -8.405 -0.422 11.897 Atomic orbital electron populations 1.70199 1.09527 1.28795 1.36674 1.26973 0.95514 1.04971 0.91269 0.84984 0.79412 0.75493 0.78469 1.16886 1.19393 1.19486 1.21456 0.94672 0.90130 1.54718 0.89509 1.18608 0.86846 0.84387 0.75861 1.90552 1.16279 1.87926 1.57105 1.46002 1.09002 1.04340 1.80804 1.21211 0.94545 0.83943 0.95647 0.93930 1.22591 1.00021 0.98184 0.96327 1.22368 0.97453 0.95424 0.99781 1.22423 0.97286 1.01028 0.93166 1.22156 0.96052 0.96263 0.96683 0.89440 1.21953 0.92530 0.88763 0.95247 1.86382 1.50473 1.35224 1.66881 0.91656 0.77188 0.93412 0.93072 0.90361 0.90331 0.89803 0.91431 0.94824 0.92839 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.69 11.83 21.84 0.26 -50.43 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 40.91 29.56 68.60 2.03 42.94 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.57 -32.41 9.54 24.83 0.24 -32.17 16 8 H 0.09 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.54 31.28 7.74 86.36 0.67 31.95 16 10 O -0.63 -42.65 14.67 -4.31 -0.06 -42.71 16 11 N -0.75 -33.33 4.34 -443.39 -1.92 -35.25 16 12 C 0.15 6.02 3.11 45.72 0.14 6.16 16 13 H 0.04 1.98 7.56 -2.39 -0.02 1.96 16 14 C -0.13 -4.75 6.60 31.39 0.21 -4.54 16 15 C -0.11 -2.90 6.85 31.74 0.22 -2.69 16 16 C -0.10 -2.55 6.17 31.88 0.20 -2.35 16 17 C -0.09 -2.77 3.11 -9.72 -0.03 -2.81 16 18 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 19 C 0.09 2.62 5.64 71.98 0.41 3.03 16 20 O -0.58 -13.91 13.50 -148.98 -2.01 -15.92 16 21 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 22 H 0.39 15.17 6.45 -92.71 -0.60 14.58 16 23 H 0.05 1.90 7.92 -2.39 -0.02 1.89 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.68 8.02 -2.38 -0.02 1.66 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.45 6.26 -2.39 -0.01 1.43 16 31 H 0.40 5.82 9.12 -74.05 -0.68 5.15 16 Total: -1.00 -75.64 259.81 0.67 -74.97 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.13 Total: 27.81 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 2.51 Total: -1.40 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.67 Total: -85.69 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: -2.07 Total: -58.63 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -75.64 0.67 -74.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229001663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.034 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds