Wall clock time and date at job start Sun Mar 29 2020 22:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.57597 * 2 1 4 4 C 1.34777 * 119.99948 * 59.84500 * 3 2 1 5 5 O 1.21689 * 120.00112 * 359.97438 * 4 3 2 6 6 C 1.46378 * 120.00219 * 180.02562 * 4 3 2 7 7 H 1.07999 * 119.99864 * 359.97438 * 6 4 3 8 8 C 1.40048 * 120.00049 * 179.97438 * 6 4 3 9 9 N 1.30668 * 120.00147 * 359.97438 * 8 6 4 10 10 Si 1.86808 * 119.99960 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46670 * 89.99774 * 10 8 6 12 12 H 1.48494 * 109.47158 * 210.00119 * 10 8 6 13 13 H 1.48497 * 109.47057 * 330.00357 * 10 8 6 14 14 C 1.53180 * 109.52251 * 239.83998 * 2 1 3 15 15 C 1.53175 * 109.03606 * 183.11473 * 14 2 1 16 16 C 1.53092 * 109.16344 * 56.98567 * 15 14 2 17 17 O 1.42905 * 109.41215 * 302.38824 * 16 15 14 18 18 C 1.42905 * 114.09831 * 61.16158 * 17 16 15 19 19 H 1.09002 * 109.47271 * 180.15184 * 1 2 3 20 20 H 1.08996 * 109.47155 * 300.15983 * 1 2 3 21 21 H 1.08996 * 109.46702 * 60.15619 * 1 2 3 22 22 H 0.97000 * 120.00370 * 239.84214 * 3 2 1 23 23 H 0.97007 * 119.99814 * 180.02562 * 9 8 6 24 24 H 1.09005 * 109.54069 * 63.25065 * 14 2 1 25 25 H 1.08996 * 109.62096 * 303.02972 * 14 2 1 26 26 H 1.09004 * 109.52714 * 297.07587 * 15 14 2 27 27 H 1.08998 * 109.52443 * 176.88852 * 15 14 2 28 28 H 1.08997 * 109.48111 * 182.40965 * 16 15 14 29 29 H 1.08999 * 109.49220 * 62.37875 * 16 15 14 30 30 H 1.09000 * 109.47932 * 58.81878 * 18 17 16 31 31 H 1.08993 * 109.48024 * 178.86013 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0208 1.3802 0.0000 4 6 1.6942 2.2116 1.0093 5 8 0.9911 1.8159 1.9203 6 6 2.1841 3.5909 1.0090 7 1 2.8077 3.9423 0.2003 8 6 1.8442 4.4550 2.0575 9 7 1.0893 4.0300 3.0357 10 14 2.4701 6.2151 2.0575 11 1 1.4956 7.0869 1.3536 12 1 2.6318 6.6829 3.4576 13 1 3.7804 6.2745 1.3613 14 6 2.0419 -0.7254 -1.2483 15 6 3.5716 -0.7872 -1.1981 16 6 4.0043 -1.4818 0.0957 17 8 3.4694 -0.7744 1.2163 18 6 2.0416 -0.7250 1.2477 19 1 -0.3634 -1.0277 0.0027 20 1 -0.3633 0.5163 0.8885 21 1 -0.3632 0.5114 -0.8914 22 1 2.5810 1.6958 -0.7263 23 1 0.8536 4.6286 3.7617 24 1 1.7280 -0.1825 -2.1399 25 1 1.6368 -1.7369 -1.2758 26 1 3.9781 0.2239 -1.2224 27 1 3.9417 -1.3501 -2.0550 28 1 5.0925 -1.4905 0.1572 29 1 3.6317 -2.5061 0.1008 30 1 1.6431 -1.7393 1.2677 31 1 1.7159 -0.1886 2.1388 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229014844.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:02 Heat of formation + Delta-G solvation = -93.825044 kcal Electronic energy + Delta-G solvation = -15096.397294 eV Core-core repulsion = 12570.464053 eV Total energy + Delta-G solvation = -2525.933241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.48941 -36.74396 -34.27417 -32.46976 -31.66624 -30.17663 -26.35751 -25.98802 -24.62156 -21.91959 -20.52171 -18.31593 -17.23584 -15.80891 -15.59174 -15.24518 -14.52128 -14.29651 -13.98374 -13.27238 -12.69216 -12.53622 -12.22961 -12.08248 -11.66025 -11.43430 -11.20961 -11.00643 -10.91155 -10.66413 -10.41444 -10.19148 -10.10343 -9.91394 -9.04314 -8.76273 -7.41848 -7.34091 -6.11129 -4.56292 3.17565 3.24518 3.28000 4.15172 4.42356 4.65010 4.84886 5.08756 5.14452 5.20711 5.44408 5.62490 5.76968 5.91538 5.93117 5.98036 6.02913 6.19113 6.24759 6.33541 6.48175 6.59562 6.87276 7.11471 7.49579 7.76613 7.99814 8.22299 8.41622 9.09625 9.63931 10.67048 10.87126 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044123 B = 0.009355 C = 0.008923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.430811 B = 2992.249108 C = 3137.112224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 N -0.749 5.749 4 C 0.563 3.437 5 O -0.578 6.578 6 C -0.545 4.545 7 H 0.064 0.936 8 C 0.089 3.911 9 N -0.768 5.768 10 Si 0.905 3.095 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.266 1.266 14 C -0.123 4.123 15 C -0.154 4.154 16 C 0.059 3.941 17 O -0.371 6.371 18 C 0.053 3.947 19 H 0.043 0.957 20 H 0.088 0.912 21 H 0.048 0.952 22 H 0.378 0.622 23 H 0.267 0.733 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -7.727 -7.538 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 N -0.404 5.404 4 C 0.367 3.633 5 O -0.462 6.462 6 C -0.582 4.582 7 H 0.083 0.917 8 C -0.130 4.130 9 N -0.397 5.397 10 Si 0.730 3.270 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.190 1.190 14 C -0.161 4.161 15 C -0.192 4.192 16 C -0.018 4.018 17 O -0.289 6.289 18 C -0.025 4.025 19 H 0.062 0.938 20 H 0.107 0.893 21 H 0.067 0.933 22 H 0.210 0.790 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.478 -7.897 -6.540 10.548 hybrid contribution 0.426 0.879 -0.723 1.216 sum 2.903 -7.017 -7.263 10.508 Atomic orbital electron populations 1.22154 0.95166 1.00385 1.03987 1.20470 0.93801 0.85146 0.93853 1.46057 1.57110 1.09415 1.27809 1.18065 0.79915 0.85369 0.79917 1.90497 1.41588 1.77267 1.36852 1.20880 1.33710 0.95045 1.08565 0.91738 1.25664 0.93412 0.99483 0.94461 1.70012 1.27137 1.35163 1.07345 0.86425 0.79805 0.82914 0.77893 1.19888 1.20524 1.19003 1.21866 0.95432 1.00453 0.98320 1.22168 0.96509 1.02325 0.98185 1.22481 0.98622 0.94082 0.86644 1.88024 1.21094 1.75856 1.43933 1.23201 0.79984 0.97938 1.01341 0.93809 0.89347 0.93258 0.79027 0.92267 0.91437 0.91550 0.90697 0.91654 0.89724 0.94173 0.94613 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.42 37.16 0.31 -2.71 16 2 C 0.16 2.98 0.68 -131.68 -0.09 2.90 16 3 N -0.75 -16.85 4.74 -48.87 -0.23 -17.08 16 4 C 0.56 15.80 7.17 -12.99 -0.09 15.71 16 5 O -0.58 -17.85 11.23 5.20 0.06 -17.79 16 6 C -0.54 -15.54 9.54 -35.63 -0.34 -15.88 16 7 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 8 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 9 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16 10 Si 0.90 20.48 29.56 -169.99 -5.02 15.45 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 C -0.12 -1.81 4.85 -26.55 -0.13 -1.94 16 15 C -0.15 -2.13 5.95 -26.59 -0.16 -2.29 16 16 C 0.06 0.88 6.84 37.20 0.25 1.14 16 17 O -0.37 -7.47 10.67 -35.23 -0.38 -7.85 16 18 C 0.05 1.07 5.41 37.21 0.20 1.27 16 19 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.09 2.04 6.15 -51.93 -0.32 1.72 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.38 7.76 7.50 -40.82 -0.31 7.45 16 23 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.13 7.10 -51.93 -0.37 0.76 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.12 2.96 6.13 -51.93 -0.32 2.64 16 LS Contribution 251.86 15.07 3.80 3.80 Total: -1.00 -32.82 251.86 -5.50 -38.32 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.24 Total: 6.92 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.14 Total: 0.60 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.43 Total: -39.45 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.32 Total: -25.64 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.82 -5.50 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229014844.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.503 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds