Wall clock time and date at job start Sun Mar 29 2020 21:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34102 * 126.09122 * 2 1 4 4 O 1.35120 * 107.28859 * 179.79538 * 3 2 1 5 5 C 1.34265 * 107.73683 * 0.38504 * 4 3 2 6 6 S 1.76206 * 125.72009 * 179.87532 * 5 4 3 7 7 C 1.81000 * 99.99929 * 359.68916 * 6 5 4 8 8 C 1.52999 * 109.46638 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46953 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46755 * 89.99832 * 13 11 9 15 15 H 1.48495 * 109.46931 * 209.99846 * 13 11 9 16 16 H 1.48500 * 109.46738 * 330.00088 * 13 11 9 17 17 N 1.31122 * 108.55521 * 359.60995 * 5 4 3 18 18 H 1.09003 * 109.46949 * 269.98433 * 1 2 3 19 19 H 1.08998 * 109.47161 * 29.98609 * 1 2 3 20 20 H 1.09004 * 109.47034 * 149.98504 * 1 2 3 21 21 H 1.07997 * 126.35128 * 0.04003 * 3 2 1 22 22 H 1.09000 * 109.47216 * 300.00172 * 7 6 5 23 23 H 1.09001 * 109.46620 * 60.00275 * 7 6 5 24 24 H 1.09000 * 109.47486 * 300.00041 * 8 7 6 25 25 H 1.09001 * 109.47362 * 60.00764 * 8 7 6 26 26 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2970 1.0837 0.0000 4 8 3.5761 0.6482 0.0046 5 6 3.5512 -0.6942 -0.0012 6 16 4.9624 -1.7494 -0.0017 7 6 6.2815 -0.5100 -0.0023 8 6 7.6408 -1.2122 -0.0021 9 6 8.7392 -0.1803 -0.0019 10 1 8.4923 0.8711 -0.0015 11 6 10.0592 -0.5784 -0.0023 12 7 10.3599 -1.8587 -0.0023 13 14 11.4207 0.7007 -0.0028 14 1 11.7817 1.0397 1.3972 15 1 12.6114 0.1558 -0.7031 16 1 10.9509 1.9232 -0.7028 17 7 2.3006 -1.0883 -0.0008 18 1 -0.3633 -0.0003 1.0277 19 1 -0.3633 0.8901 -0.5136 20 1 -0.3633 -0.8899 -0.5141 21 1 1.9713 2.1133 0.0006 22 1 6.1941 0.1132 -0.8922 23 1 6.1947 0.1132 0.8878 24 1 7.7280 -1.8351 0.8881 25 1 7.7279 -1.8357 -0.8919 26 1 11.2885 -2.1389 -0.0021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235815574.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:14 Heat of formation + Delta-G solvation = 5.222056 kcal Electronic energy + Delta-G solvation = -11364.114327 eV Core-core repulsion = 9149.395866 eV Total energy + Delta-G solvation = -2214.718460 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.99651 -35.03349 -33.82761 -31.46608 -31.04259 -27.48157 -25.41779 -23.10826 -21.42384 -20.98352 -17.78838 -16.66611 -16.58207 -15.98512 -14.63045 -14.54786 -13.92844 -13.76671 -13.36866 -13.00882 -12.30140 -12.11873 -11.80647 -11.16110 -11.01427 -10.72004 -10.44824 -10.40981 -10.30431 -9.80005 -9.32657 -9.25958 -8.50948 -7.30837 -6.14804 -4.19931 1.28462 1.49336 2.36004 2.69265 3.25259 3.31812 3.34937 3.52191 4.35550 4.66966 4.86191 5.21334 5.31368 5.46244 5.62944 5.76566 5.77702 5.96242 5.97535 6.28685 6.50436 7.38725 7.44714 7.72084 7.79608 8.15215 8.84123 9.44799 10.96044 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.076778 B = 0.005754 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.599036 B = 4864.778074 C = 5203.626842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.010 4.010 3 C -0.090 4.090 4 O -0.198 6.198 5 C 0.182 3.818 6 S 0.032 5.968 7 C -0.103 4.103 8 C 0.036 3.964 9 C -0.522 4.522 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.900 3.100 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 N -0.477 5.477 18 H 0.073 0.927 19 H 0.073 0.927 20 H 0.075 0.925 21 H 0.212 0.788 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 4.874 -0.004 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.132 4.132 3 C -0.165 4.165 4 O -0.087 6.087 5 C -0.132 4.132 6 S 0.264 5.736 7 C -0.251 4.251 8 C -0.004 4.004 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.528 5.528 13 Si 0.727 3.273 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.211 5.211 18 H 0.092 0.908 19 H 0.092 0.908 20 H 0.094 0.906 21 H 0.228 0.772 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.417 2.927 -0.008 14.712 hybrid contribution 0.831 2.770 0.021 2.891 sum -13.587 5.697 0.013 14.733 Atomic orbital electron populations 1.20077 0.86583 1.03191 1.02742 1.21857 0.98031 0.88369 1.04902 1.24671 0.80381 1.00832 1.10607 1.84759 1.30398 1.22783 1.70712 1.28691 0.99863 0.82019 1.02619 1.86401 0.89128 1.07108 1.90937 1.24165 0.96723 0.98820 1.05397 1.18975 0.86255 0.96247 0.98892 1.21027 0.90249 0.92704 1.52244 0.92165 1.25012 0.98856 0.95496 0.94837 1.69955 1.18864 1.14347 1.49652 0.86472 0.81225 0.81371 0.78249 1.20476 1.21027 1.19753 1.70804 0.98971 1.30531 1.20771 0.90813 0.90840 0.90644 0.77171 0.89741 0.89751 0.95126 0.95112 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 36.01 0.38 -0.28 15 2 C -0.01 -0.15 7.10 -82.79 -0.59 -0.74 15 3 C -0.09 -1.21 12.07 29.28 0.35 -0.86 15 4 O -0.20 -3.39 10.24 3.51 0.04 -3.36 15 5 C 0.18 3.33 8.35 52.46 0.44 3.77 15 6 S 0.03 0.59 22.31 -107.50 -2.40 -1.81 15 7 C -0.10 -2.09 5.21 37.16 0.19 -1.90 15 8 C 0.04 0.88 4.98 -27.88 -0.14 0.74 15 9 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 15 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -25.85 13.29 55.43 0.74 -25.12 15 13 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 17 N -0.48 -8.54 11.35 -10.12 -0.11 -8.66 15 18 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.07 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.21 1.81 8.06 -52.49 -0.42 1.39 15 22 H 0.08 1.68 8.14 -51.92 -0.42 1.26 15 23 H 0.08 1.68 8.14 -51.92 -0.42 1.25 15 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.26 7.22 8.31 -40.82 -0.34 6.89 15 LS Contribution 251.85 15.07 3.80 3.80 Total: -1.00 -30.40 251.85 -5.67 -36.06 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -2.92 Total: -4.71 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 0.22 Total: -12.16 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.62 Total: -33.77 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.40 Total: -1.81 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.40 -5.67 -36.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235815574.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds