Wall clock time and date at job start Sun Mar 29 2020 21:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47165 * 240.00206 * 3 2 1 5 5 H 1.48494 * 109.46877 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46995 * 120.00505 * 3 2 1 7 7 C 1.37883 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47336 * 180.02562 * 10 9 7 12 12 S 1.81002 * 109.47290 * 180.02562 * 11 10 9 13 13 C 1.76200 * 100.00219 * 179.97438 * 12 11 10 14 14 N 1.31122 * 125.71900 * 359.68843 * 13 12 11 15 15 C 1.34692 * 108.60449 * 180.26454 * 14 13 12 16 16 C 1.34102 * 107.80998 * 359.97438 * 15 14 13 17 17 O 1.34264 * 125.72160 * 179.97438 * 13 12 11 18 18 H 0.97005 * 119.99907 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47025 * 60.00562 * 9 7 2 20 20 H 1.08998 * 109.47217 * 300.00366 * 9 7 2 21 21 H 1.09004 * 109.46884 * 59.99828 * 10 9 7 22 22 H 1.09004 * 109.47332 * 300.00683 * 10 9 7 23 23 H 1.08998 * 109.47207 * 60.00266 * 11 10 9 24 24 H 1.08998 * 109.46950 * 300.00123 * 11 10 9 25 25 H 1.08001 * 126.10191 * 179.97438 * 15 14 13 26 26 H 1.08001 * 126.35667 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6563 -6.3629 -0.0004 13 6 1.5362 -7.7231 -0.0005 14 7 0.2278 -7.6372 0.0047 15 6 -0.2846 -8.8829 0.0085 16 6 0.7402 -9.7479 0.0049 17 8 1.8793 -9.0211 -0.0006 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8896 21 1 2.8718 -3.6044 0.8895 22 1 2.8719 -3.6044 -0.8905 23 1 0.8538 -5.0446 -0.8914 24 1 0.8532 -5.0450 0.8886 25 1 -1.3336 -9.1395 0.0136 26 1 0.6684 -10.8255 0.0070 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236169994.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:51 Heat of formation + Delta-G solvation = -13.592619 kcal Electronic energy + Delta-G solvation = -11265.606961 eV Core-core repulsion = 9050.072635 eV Total energy + Delta-G solvation = -2215.534326 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.17732 -36.44135 -35.77976 -34.07157 -31.22658 -29.44748 -25.52908 -24.14295 -23.53110 -22.06088 -19.55235 -18.48844 -17.75687 -17.22052 -16.56845 -16.23571 -15.82941 -15.42529 -14.45604 -14.15136 -13.74492 -13.72782 -12.90384 -12.74980 -12.54054 -12.45391 -11.93919 -11.69008 -11.68845 -11.32784 -11.16875 -10.77091 -10.54455 -8.73356 -8.19234 -6.30718 -0.24369 0.30334 0.96707 1.42774 1.45696 1.53577 1.58562 2.25980 2.42817 3.14505 3.86665 3.96365 3.98994 4.05602 4.45928 4.52257 4.77298 4.83443 4.95660 5.12727 5.18802 5.49826 5.67309 5.83140 6.21763 6.48349 6.85499 7.38663 8.92514 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.086328 B = 0.005148 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.267348 B = 5437.379307 C = 5735.896986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.084 4.084 11 C -0.090 4.090 12 S 0.047 5.953 13 C 0.143 3.857 14 N -0.516 5.516 15 C -0.058 4.058 16 C -0.058 4.058 17 O -0.199 6.199 18 H 0.264 0.736 19 H -0.004 1.004 20 H -0.004 1.004 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.213 0.787 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -17.820 0.011 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.007 4.007 10 C -0.124 4.124 11 C -0.239 4.239 12 S 0.279 5.721 13 C -0.170 4.170 14 N -0.251 5.251 15 C -0.197 4.197 16 C -0.131 4.131 17 O -0.086 6.086 18 H 0.073 0.927 19 H 0.014 0.986 20 H 0.014 0.986 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.230 0.770 26 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.813 -17.144 0.011 17.563 hybrid contribution -1.220 0.163 -0.001 1.231 sum 2.593 -16.980 0.011 17.177 Atomic orbital electron populations 1.70094 1.07870 1.27908 1.51503 1.25991 0.95753 1.03433 0.94671 0.85481 0.78231 0.77958 0.79269 1.19065 1.21012 1.19076 1.21651 0.93778 0.92024 1.50806 0.91650 1.18955 0.94150 0.92230 0.95412 1.21266 0.98280 0.90312 1.02503 1.23648 0.99737 0.94138 1.06355 1.85556 1.05258 0.89531 1.91790 1.28358 0.94809 0.88043 1.05839 1.71075 1.06018 1.27712 1.20277 1.23973 1.03204 0.86698 1.05823 1.26085 0.81281 1.00526 1.05231 1.84659 1.36757 1.16814 1.70359 0.92741 0.98553 0.98566 0.91244 0.91246 0.89573 0.89582 0.77004 0.71606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 15 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 15 3 Si 0.97 43.97 29.54 68.60 2.03 46.00 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 15 8 H 0.07 3.48 7.74 -2.91 -0.02 3.45 15 9 C 0.03 1.65 4.97 29.85 0.15 1.80 15 10 C -0.08 -3.37 5.16 30.59 0.16 -3.21 15 11 C -0.09 -3.20 5.19 71.98 0.37 -2.82 15 12 S 0.05 1.41 22.31 -56.49 -1.26 0.15 15 13 C 0.14 4.41 8.42 130.35 1.10 5.50 15 14 N -0.52 -16.43 10.65 -312.11 -3.32 -19.75 15 15 C -0.06 -1.29 11.88 83.31 0.99 -0.30 15 16 C -0.06 -1.05 12.16 66.88 0.81 -0.23 15 17 O -0.20 -5.20 10.80 -10.35 -0.11 -5.32 15 18 H 0.26 15.14 8.31 -92.70 -0.77 14.37 15 19 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15 20 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 21 H 0.07 2.66 8.14 -2.39 -0.02 2.64 15 22 H 0.07 2.66 8.14 -2.38 -0.02 2.64 15 23 H 0.09 3.17 8.14 -2.40 -0.02 3.15 15 24 H 0.09 3.16 8.14 -2.40 -0.02 3.15 15 25 H 0.21 3.21 8.06 -2.91 -0.02 3.19 15 26 H 0.27 1.58 8.06 -2.91 -0.02 1.55 15 Total: -1.00 -67.98 251.28 3.06 -64.93 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.16 Total: -0.12 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 4.28 Total: -29.25 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.04 Total: -76.39 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.11 Total: -5.32 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.26 Total: 0.15 kcal Total: -67.98 3.06 -64.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236169994.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.336 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds