Wall clock time and date at job start Sun Mar 29 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48499 * 109.47155 * 274.97960 * 3 2 1 5 5 H 1.48497 * 109.47462 * 34.98140 * 3 2 1 6 6 H 1.48509 * 109.47045 * 154.98291 * 3 2 1 7 7 C 1.40047 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99540 * 186.15424 * 7 2 1 9 9 C 1.46372 * 120.00467 * 6.15722 * 7 2 1 10 10 O 1.21687 * 119.99897 * 353.93462 * 9 7 2 11 11 N 1.34775 * 119.99845 * 173.93797 * 9 7 2 12 12 C 1.46500 * 119.99600 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47200 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.53476 * 52.38662 * 13 12 11 15 15 C 1.54886 * 110.48873 * 289.77757 * 13 12 11 16 16 C 1.54889 * 102.75009 * 203.37876 * 15 13 12 17 17 C 1.54267 * 104.19715 * 37.93918 * 16 15 13 18 18 H 1.09001 * 110.03045 * 95.67787 * 17 16 15 19 19 O 1.42900 * 110.07108 * 217.08758 * 17 16 15 20 20 C 1.53875 * 106.59543 * 336.39033 * 17 16 15 21 21 H 0.97000 * 119.99787 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00460 * 359.97438 * 11 9 7 23 23 H 1.09000 * 109.47082 * 60.00219 * 12 11 9 24 24 H 1.09002 * 109.47471 * 299.99920 * 12 11 9 25 25 H 1.09001 * 110.75274 * 321.69187 * 15 13 12 26 26 H 1.08999 * 110.75932 * 85.06020 * 15 13 12 27 27 H 1.09005 * 110.48508 * 279.25986 * 16 15 13 28 28 H 1.08999 * 110.48531 * 156.62157 * 16 15 13 29 29 H 0.96694 * 113.99623 * 297.87876 * 19 17 16 30 30 H 1.09001 * 110.02918 * 119.28525 * 20 17 16 31 31 H 1.08998 * 110.03454 * 240.71099 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1369 11 7 1.9612 -3.6343 -0.2572 12 6 1.2350 -4.8994 -0.3922 13 6 2.2350 -6.0510 -0.5143 14 1 2.9561 -6.0194 0.3025 15 6 2.9614 -5.9955 -1.8811 16 6 3.4194 -7.4611 -2.0846 17 6 2.2513 -8.3028 -1.5306 18 1 1.5864 -8.5985 -2.3421 19 8 2.7552 -9.4620 -0.8640 20 6 1.4983 -7.4062 -0.5321 21 1 -0.4850 0.8401 -0.0004 22 1 2.9312 -3.6296 -0.2559 23 1 0.6094 -4.8659 -1.2841 24 1 0.6079 -5.0539 0.4859 25 1 2.2748 -5.6921 -2.6714 26 1 3.8198 -5.3253 -1.8355 27 1 4.3318 -7.6573 -1.5214 28 1 3.5713 -7.6697 -3.1436 29 1 3.2495 -10.0624 -1.4386 30 1 0.4679 -7.2668 -0.8591 31 1 1.5178 -7.8550 0.4610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236537731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:00 Heat of formation + Delta-G solvation = -112.056243 kcal Electronic energy + Delta-G solvation = -14057.633138 eV Core-core repulsion = 11530.909332 eV Total energy + Delta-G solvation = -2526.723806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98307 -37.14336 -35.39614 -32.88744 -32.11290 -29.26493 -27.98162 -26.17751 -23.58350 -20.74240 -19.77916 -19.53793 -17.63543 -17.10281 -15.43880 -15.15418 -14.93248 -14.13395 -13.93907 -13.70507 -13.55826 -12.72138 -12.34724 -12.17627 -11.66359 -11.25758 -11.21282 -10.96263 -10.89604 -10.68105 -10.48579 -10.37178 -10.32174 -10.16793 -9.91025 -8.81942 -7.57209 -7.43611 -6.16284 -4.60213 3.15590 3.22617 3.26312 4.10087 4.17186 4.57303 4.62443 4.63191 4.90564 5.09089 5.28592 5.47414 5.56764 5.64831 5.72474 5.82449 5.84931 5.99372 6.04430 6.17366 6.27484 6.34439 6.61105 6.71693 7.46668 7.56296 7.98032 8.15781 8.37531 9.05809 9.59126 10.63644 10.82688 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072888 B = 0.005740 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.060886 B = 4877.192778 C = 5120.453773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.767 5.767 12 C 0.141 3.859 13 C -0.100 4.100 14 H 0.078 0.922 15 C -0.115 4.115 16 C -0.158 4.158 17 C 0.099 3.901 18 H 0.057 0.943 19 O -0.568 6.568 20 C -0.112 4.112 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.373 0.627 30 H 0.076 0.924 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -12.763 -4.090 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.422 5.422 12 C 0.015 3.985 13 C -0.119 4.119 14 H 0.096 0.904 15 C -0.153 4.153 16 C -0.196 4.196 17 C 0.040 3.960 18 H 0.075 0.925 19 O -0.374 6.374 20 C -0.150 4.150 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.220 0.780 30 H 0.095 0.905 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.822 -12.380 -3.569 14.139 hybrid contribution 1.208 0.538 -0.552 1.433 sum 7.030 -11.842 -4.122 14.375 Atomic orbital electron populations 1.70037 1.07086 1.27177 1.35480 1.25705 0.94576 1.00268 0.92621 0.86373 0.80239 0.81570 0.78633 1.19840 1.20473 1.18911 1.20898 0.94077 0.89682 1.53784 0.91452 1.18220 0.87141 0.82484 0.76382 1.90592 1.14149 1.86540 1.55305 1.46106 1.08506 1.05800 1.81802 1.20907 0.93551 0.83659 1.00343 1.22213 0.97738 0.94053 0.97889 0.90384 1.22488 1.00362 0.95095 0.97347 1.23123 0.98930 0.96780 1.00732 1.22533 0.94096 0.85224 0.94147 0.92535 1.86565 1.74927 1.35167 1.40708 1.22119 0.99027 0.93866 1.00029 0.92172 0.78953 0.93365 0.93462 0.90989 0.91105 0.90767 0.91702 0.78044 0.90504 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.44 11.85 55.55 0.66 -22.78 16 2 C 0.09 2.49 5.49 -17.36 -0.10 2.39 16 3 Si 0.91 20.35 29.56 -169.99 -5.03 15.32 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.72 9.53 -35.63 -0.34 -16.06 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 9 C 0.55 16.11 7.74 -12.99 -0.10 16.01 16 10 O -0.58 -19.33 15.05 5.20 0.08 -19.25 16 11 N -0.77 -17.43 5.44 -61.72 -0.34 -17.76 16 12 C 0.14 2.74 4.96 -4.04 -0.02 2.72 16 13 C -0.10 -1.46 2.89 -88.96 -0.26 -1.72 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.50 6.19 -24.74 -0.15 -1.65 16 16 C -0.16 -1.67 6.55 -25.07 -0.16 -1.84 16 17 C 0.10 1.11 4.26 -25.61 -0.11 1.00 16 18 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 19 O -0.57 -6.30 13.22 -35.23 -0.47 -6.77 16 20 C -0.11 -1.48 6.18 -25.61 -0.16 -1.63 16 21 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 22 H 0.38 7.57 8.42 -40.82 -0.34 7.22 16 23 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.37 2.43 9.11 45.56 0.41 2.84 16 30 H 0.08 0.99 7.84 -51.93 -0.41 0.59 16 31 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -35.25 264.48 -6.16 -41.41 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.66 Total: 6.62 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.40 Total: -0.78 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.32 Total: -40.54 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.39 Total: -26.01 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.25 -6.16 -41.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236537731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.645 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds