Wall clock time and date at job start Sun Mar 29 2020 22:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48499 * 109.47155 * 274.97960 * 3 2 1 5 5 H 1.48497 * 109.47462 * 34.98140 * 3 2 1 6 6 H 1.48509 * 109.47045 * 154.98291 * 3 2 1 7 7 C 1.40047 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99540 * 186.15424 * 7 2 1 9 9 C 1.46372 * 120.00467 * 6.15722 * 7 2 1 10 10 O 1.21687 * 119.99897 * 353.93462 * 9 7 2 11 11 N 1.34775 * 119.99845 * 173.93797 * 9 7 2 12 12 C 1.46500 * 119.99600 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47200 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.53476 * 52.38662 * 13 12 11 15 15 C 1.54886 * 110.48873 * 289.77757 * 13 12 11 16 16 C 1.54889 * 102.75009 * 203.37876 * 15 13 12 17 17 C 1.54267 * 104.19715 * 37.93918 * 16 15 13 18 18 H 1.09001 * 110.03045 * 95.67787 * 17 16 15 19 19 O 1.42900 * 110.07108 * 217.08758 * 17 16 15 20 20 C 1.53875 * 106.59543 * 336.39033 * 17 16 15 21 21 H 0.97000 * 119.99787 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00460 * 359.97438 * 11 9 7 23 23 H 1.09000 * 109.47082 * 60.00219 * 12 11 9 24 24 H 1.09002 * 109.47471 * 299.99920 * 12 11 9 25 25 H 1.09001 * 110.75274 * 321.69187 * 15 13 12 26 26 H 1.08999 * 110.75932 * 85.06020 * 15 13 12 27 27 H 1.09005 * 110.48508 * 279.25986 * 16 15 13 28 28 H 1.08999 * 110.48531 * 156.62157 * 16 15 13 29 29 H 0.96694 * 113.99623 * 297.87876 * 19 17 16 30 30 H 1.09001 * 110.02918 * 119.28525 * 20 17 16 31 31 H 1.08998 * 110.03454 * 240.71099 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5870 1.4121 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0646 -2.4828 -0.1369 11 7 1.9612 -3.6343 -0.2572 12 6 1.2350 -4.8994 -0.3922 13 6 2.2350 -6.0510 -0.5143 14 1 2.9561 -6.0194 0.3025 15 6 2.9614 -5.9955 -1.8811 16 6 3.4194 -7.4611 -2.0846 17 6 2.2513 -8.3028 -1.5306 18 1 1.5864 -8.5985 -2.3421 19 8 2.7552 -9.4620 -0.8640 20 6 1.4983 -7.4062 -0.5321 21 1 -0.4850 0.8401 -0.0004 22 1 2.9312 -3.6296 -0.2559 23 1 0.6094 -4.8659 -1.2841 24 1 0.6079 -5.0539 0.4859 25 1 2.2748 -5.6921 -2.6714 26 1 3.8198 -5.3253 -1.8355 27 1 4.3318 -7.6573 -1.5214 28 1 3.5713 -7.6697 -3.1436 29 1 3.2495 -10.0624 -1.4386 30 1 0.4679 -7.2668 -0.8591 31 1 1.5178 -7.8550 0.4610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236537731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:59 Heat of formation + Delta-G solvation = -140.616250 kcal Electronic energy + Delta-G solvation = -14058.871593 eV Core-core repulsion = 11530.909332 eV Total energy + Delta-G solvation = -2527.962260 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16330 -39.05301 -36.61114 -34.80749 -34.13482 -30.60588 -29.23289 -28.07149 -25.09715 -21.97292 -21.39538 -20.95991 -19.13451 -18.48424 -17.44161 -16.51320 -16.38604 -15.85799 -15.39127 -15.06271 -14.70788 -14.34722 -14.09604 -13.41891 -13.32087 -13.04088 -12.75719 -12.61125 -12.32810 -12.07509 -11.96296 -11.70110 -11.59725 -11.54769 -10.93224 -10.76842 -9.87605 -9.47415 -8.30175 -6.85596 1.40654 1.41985 1.58184 2.25263 2.47005 3.05706 3.42671 3.60054 3.61082 3.70925 3.87783 4.29589 4.44444 4.51140 4.52764 4.61198 4.78465 4.87504 4.93416 5.00887 5.08521 5.27412 5.32029 5.32361 5.42761 5.87824 6.24177 6.28177 6.86569 6.96368 7.55910 8.48960 8.67185 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072888 B = 0.005740 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.060886 B = 4877.192778 C = 5120.453773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.143 3.857 13 C -0.090 4.090 14 H 0.082 0.918 15 C -0.116 4.116 16 C -0.145 4.145 17 C 0.103 3.897 18 H 0.071 0.929 19 O -0.583 6.583 20 C -0.115 4.115 21 H 0.275 0.725 22 H 0.395 0.605 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.394 0.606 30 H 0.073 0.927 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.539 -12.949 -4.730 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.018 3.982 13 C -0.108 4.108 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.183 4.183 17 C 0.044 3.956 18 H 0.089 0.911 19 O -0.392 6.392 20 C -0.153 4.153 21 H 0.084 0.916 22 H 0.229 0.771 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.244 0.756 30 H 0.091 0.909 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.197 -12.632 -4.221 15.639 hybrid contribution 0.464 0.510 -0.335 0.766 sum 8.661 -12.122 -4.557 15.579 Atomic orbital electron populations 1.70205 1.09659 1.28977 1.36480 1.27015 0.95501 1.05069 0.91122 0.84972 0.78892 0.74972 0.79210 1.18691 1.19767 1.17072 1.21451 0.95260 0.90295 1.54168 0.89344 1.18670 0.86794 0.84456 0.76198 1.90544 1.16357 1.87691 1.57791 1.45776 1.09260 1.05525 1.80100 1.20997 0.94484 0.84059 0.98626 1.22095 0.96686 0.92683 0.99384 0.89982 1.22483 1.00007 0.97286 0.95628 1.23050 0.98687 0.94280 1.02265 1.22428 0.94396 0.85206 0.93521 0.91059 1.86514 1.75409 1.35434 1.41835 1.22112 0.99150 0.93393 1.00650 0.91552 0.77124 0.94872 0.95536 0.91909 0.90833 0.90150 0.89448 0.75596 0.90873 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.36 11.85 21.84 0.26 -51.10 16 2 C 0.03 1.57 5.49 85.30 0.47 2.04 16 3 Si 1.00 41.27 29.56 68.60 2.03 43.30 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.58 -33.19 9.53 24.83 0.24 -32.95 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.53 31.95 7.74 86.36 0.67 32.62 16 10 O -0.64 -44.04 15.05 -4.31 -0.06 -44.10 16 11 N -0.75 -34.73 5.44 -467.41 -2.54 -37.27 16 12 C 0.14 5.74 4.96 86.38 0.43 6.17 16 13 C -0.09 -2.57 2.89 -9.72 -0.03 -2.59 16 14 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 15 C -0.12 -2.83 6.19 31.88 0.20 -2.63 16 16 C -0.15 -2.63 6.55 31.67 0.21 -2.42 16 17 C 0.10 2.05 4.26 31.32 0.13 2.19 16 18 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 19 O -0.58 -11.33 13.22 -148.98 -1.97 -13.30 16 20 C -0.11 -2.92 6.18 31.32 0.19 -2.72 16 21 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 22 H 0.40 15.60 8.42 -92.71 -0.78 14.82 16 23 H 0.03 1.42 8.02 -2.39 -0.02 1.40 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.65 7.96 -2.39 -0.02 1.63 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.40 8.08 -2.38 -0.02 1.38 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.39 3.85 9.11 -74.06 -0.67 3.17 16 30 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 31 H 0.07 1.89 7.95 -2.39 -0.02 1.87 16 Total: -1.00 -78.22 264.48 -0.10 -78.32 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.32 Total: 24.46 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 2.51 Total: -0.31 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -2.29 Total: -88.37 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -2.03 Total: -57.40 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -78.22 -0.10 -78.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236537731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.294 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds