Wall clock time and date at job start Sun Mar 29 2020 22:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47309 * 85.01964 * 3 2 1 5 5 H 1.48500 * 109.47052 * 205.02256 * 3 2 1 6 6 H 1.48500 * 109.47143 * 325.01834 * 3 2 1 7 7 C 1.40046 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 186.78953 * 7 2 1 9 9 C 1.46370 * 120.00170 * 6.79296 * 7 2 1 10 10 O 1.21689 * 120.00101 * 6.75142 * 9 7 2 11 11 N 1.34781 * 120.00175 * 186.74986 * 9 7 2 12 12 C 1.46496 * 119.99983 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47236 * 180.02562 * 12 11 9 14 14 H 1.09009 * 110.43158 * 307.53902 * 13 12 11 15 15 C 1.54886 * 110.48793 * 70.22287 * 13 12 11 16 16 C 1.54885 * 102.75014 * 156.62389 * 15 13 12 17 17 C 1.54271 * 104.19532 * 322.05899 * 16 15 13 18 18 H 1.08998 * 110.03270 * 142.89444 * 17 16 15 19 19 O 1.42898 * 110.02873 * 264.32639 * 17 16 15 20 20 C 1.53870 * 106.59782 * 23.61074 * 17 16 15 21 21 H 0.96992 * 120.00478 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99847 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.47326 * 299.99926 * 12 11 9 24 24 H 1.09005 * 109.47298 * 60.00025 * 12 11 9 25 25 H 1.09004 * 110.75541 * 274.93735 * 15 13 12 26 26 H 1.09000 * 110.75389 * 38.30825 * 15 13 12 27 27 H 1.09003 * 110.48761 * 203.37806 * 16 15 13 28 28 H 1.08998 * 110.60003 * 80.79351 * 16 15 13 29 29 H 0.96700 * 113.99818 * 297.16295 * 19 17 16 30 30 H 1.09001 * 110.03415 * 240.71806 * 20 17 16 31 31 H 1.08996 * 110.03691 * 119.28464 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 1.3948 5 1 3.5869 1.4121 -0.5922 6 1 1.4947 2.6200 -0.8027 7 6 2.0070 -1.2128 -0.0005 8 1 3.0813 -1.2161 0.1100 9 6 1.2829 -2.4759 -0.1510 10 8 0.0914 -2.4685 -0.3983 11 7 1.9358 -3.6473 -0.0158 12 6 1.2109 -4.9115 -0.1659 13 6 2.1774 -6.0805 0.0349 14 1 3.0480 -5.9699 -0.6117 15 6 2.6097 -6.1776 1.5190 16 6 3.0324 -7.6615 1.6555 17 6 2.0106 -8.4270 0.7896 18 1 2.5005 -9.2564 0.2796 19 8 0.9448 -8.9151 1.6068 20 6 1.4670 -7.4218 -0.2408 21 1 -0.4850 0.8399 -0.0004 22 1 2.8856 -3.6532 0.1809 23 1 0.4165 -4.9654 0.5785 24 1 0.7774 -4.9654 -1.1646 25 1 3.4523 -5.5160 1.7200 26 1 1.7734 -5.9518 2.1806 27 1 2.9678 -7.9824 2.6952 28 1 4.0426 -7.8091 1.2737 29 1 1.2238 -9.5537 2.2772 30 1 0.3902 -7.3062 -0.1176 31 1 1.6931 -7.7633 -1.2509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236539074.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:03 Heat of formation + Delta-G solvation = -111.639009 kcal Electronic energy + Delta-G solvation = -14104.836708 eV Core-core repulsion = 11578.130995 eV Total energy + Delta-G solvation = -2526.705713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.99785 -37.12077 -35.27855 -32.85752 -32.09846 -29.23642 -28.06194 -26.18038 -23.58006 -20.71860 -19.81190 -19.52650 -17.23336 -16.98998 -15.83843 -15.28424 -15.06294 -14.22733 -13.90549 -13.69586 -12.83063 -12.72054 -12.39042 -12.11814 -11.69164 -11.50515 -11.16009 -10.97158 -10.88689 -10.57782 -10.45673 -10.35091 -10.29113 -10.16537 -9.90696 -8.80085 -7.55356 -7.41718 -6.17125 -4.58396 3.16078 3.23375 3.27624 4.11414 4.19375 4.56020 4.63841 4.66462 4.96735 5.02398 5.39439 5.44853 5.54836 5.65057 5.73529 5.82916 5.86503 5.97005 6.06699 6.19119 6.29938 6.42157 6.62180 6.76385 7.47511 7.61873 7.99514 8.17303 8.38896 9.06942 9.60783 10.65032 10.83748 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068396 B = 0.005884 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.279420 B = 4757.460999 C = 4954.840055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.584 6.584 11 N -0.767 5.767 12 C 0.141 3.859 13 C -0.101 4.101 14 H 0.077 0.923 15 C -0.113 4.113 16 C -0.157 4.157 17 C 0.100 3.900 18 H 0.053 0.947 19 O -0.565 6.565 20 C -0.113 4.113 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.372 0.628 30 H 0.082 0.918 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 -13.609 2.570 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.467 6.467 11 N -0.422 5.422 12 C 0.016 3.984 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.151 4.151 16 C -0.194 4.194 17 C 0.041 3.959 18 H 0.071 0.929 19 O -0.370 6.370 20 C -0.151 4.151 21 H 0.079 0.921 22 H 0.210 0.790 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.219 0.781 30 H 0.100 0.900 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.078 -13.099 1.993 14.577 hybrid contribution 1.310 0.388 0.456 1.440 sum 7.388 -12.711 2.449 14.905 Atomic orbital electron populations 1.69996 1.07138 1.27295 1.35539 1.25692 0.94555 1.00263 0.92540 0.86381 0.80308 0.81591 0.78582 1.19894 1.18873 1.20407 1.20882 0.94157 0.89693 1.53805 0.91462 1.18212 0.86729 0.82462 0.76650 1.90587 1.15944 1.86984 1.53205 1.46109 1.11515 1.05005 1.79567 1.20903 0.93845 0.83437 1.00217 1.22229 0.98648 0.94259 0.96820 0.90497 1.22501 1.01337 0.94804 0.96420 1.23100 0.99000 0.97354 0.99994 1.22475 0.87142 0.95176 0.91112 0.92879 1.86598 1.35858 1.63887 1.50663 1.22160 1.02141 0.93490 0.97330 0.92108 0.78993 0.93243 0.93559 0.91370 0.90895 0.91371 0.91146 0.78098 0.89951 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.64 11.91 55.55 0.66 -22.98 16 2 C 0.09 2.54 5.48 -17.36 -0.10 2.44 16 3 Si 0.91 20.45 29.56 -169.99 -5.03 15.42 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -15.84 9.53 -35.63 -0.34 -16.18 16 8 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 9 C 0.56 16.31 7.72 -12.99 -0.10 16.21 16 10 O -0.58 -19.57 15.11 5.20 0.08 -19.49 16 11 N -0.77 -17.63 5.44 -61.72 -0.34 -17.97 16 12 C 0.14 2.82 4.96 -4.04 -0.02 2.80 16 13 C -0.10 -1.47 2.89 -88.96 -0.26 -1.73 16 14 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 15 C -0.11 -1.54 6.19 -24.74 -0.15 -1.69 16 16 C -0.16 -1.66 6.56 -25.07 -0.16 -1.82 16 17 C 0.10 1.11 4.26 -25.61 -0.11 1.00 16 18 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 19 O -0.56 -6.68 13.21 -35.23 -0.47 -7.15 16 20 C -0.11 -1.48 6.18 -25.61 -0.16 -1.64 16 21 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 22 H 0.38 7.61 8.42 -40.82 -0.34 7.26 16 23 H 0.05 1.08 8.02 -51.93 -0.42 0.67 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 27 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.37 2.65 9.11 45.56 0.41 3.07 16 30 H 0.08 1.22 7.65 -51.93 -0.40 0.83 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -35.76 264.55 -6.15 -41.91 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.66 Total: 6.87 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.40 Total: -0.61 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.33 Total: -40.95 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.39 Total: -26.64 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.76 -6.15 -41.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236539074.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.725 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds