Wall clock time and date at job start Sun Mar 29 2020 22:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47309 * 85.01964 * 3 2 1 5 5 H 1.48500 * 109.47052 * 205.02256 * 3 2 1 6 6 H 1.48500 * 109.47143 * 325.01834 * 3 2 1 7 7 C 1.40046 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 186.78953 * 7 2 1 9 9 C 1.46370 * 120.00170 * 6.79296 * 7 2 1 10 10 O 1.21689 * 120.00101 * 6.75142 * 9 7 2 11 11 N 1.34781 * 120.00175 * 186.74986 * 9 7 2 12 12 C 1.46496 * 119.99983 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47236 * 180.02562 * 12 11 9 14 14 H 1.09009 * 110.43158 * 307.53902 * 13 12 11 15 15 C 1.54886 * 110.48793 * 70.22287 * 13 12 11 16 16 C 1.54885 * 102.75014 * 156.62389 * 15 13 12 17 17 C 1.54271 * 104.19532 * 322.05899 * 16 15 13 18 18 H 1.08998 * 110.03270 * 142.89444 * 17 16 15 19 19 O 1.42898 * 110.02873 * 264.32639 * 17 16 15 20 20 C 1.53870 * 106.59782 * 23.61074 * 17 16 15 21 21 H 0.96992 * 120.00478 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99847 * 359.97438 * 11 9 7 23 23 H 1.09001 * 109.47326 * 299.99926 * 12 11 9 24 24 H 1.09005 * 109.47298 * 60.00025 * 12 11 9 25 25 H 1.09004 * 110.75541 * 274.93735 * 15 13 12 26 26 H 1.09000 * 110.75389 * 38.30825 * 15 13 12 27 27 H 1.09003 * 110.48761 * 203.37806 * 16 15 13 28 28 H 1.08998 * 110.60003 * 80.79351 * 16 15 13 29 29 H 0.96700 * 113.99818 * 297.16295 * 19 17 16 30 30 H 1.09001 * 110.03415 * 240.71806 * 20 17 16 31 31 H 1.08996 * 110.03691 * 119.28464 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 1.3948 5 1 3.5869 1.4121 -0.5922 6 1 1.4947 2.6200 -0.8027 7 6 2.0070 -1.2128 -0.0005 8 1 3.0813 -1.2161 0.1100 9 6 1.2829 -2.4759 -0.1510 10 8 0.0914 -2.4685 -0.3983 11 7 1.9358 -3.6473 -0.0158 12 6 1.2109 -4.9115 -0.1659 13 6 2.1774 -6.0805 0.0349 14 1 3.0480 -5.9699 -0.6117 15 6 2.6097 -6.1776 1.5190 16 6 3.0324 -7.6615 1.6555 17 6 2.0106 -8.4270 0.7896 18 1 2.5005 -9.2564 0.2796 19 8 0.9448 -8.9151 1.6068 20 6 1.4670 -7.4218 -0.2408 21 1 -0.4850 0.8399 -0.0004 22 1 2.8856 -3.6532 0.1809 23 1 0.4165 -4.9654 0.5785 24 1 0.7774 -4.9654 -1.1646 25 1 3.4523 -5.5160 1.7200 26 1 1.7734 -5.9518 2.1806 27 1 2.9678 -7.9824 2.6952 28 1 4.0426 -7.8091 1.2737 29 1 1.2238 -9.5537 2.2772 30 1 0.3902 -7.3062 -0.1176 31 1 1.6931 -7.7633 -1.2509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236539074.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:02 Heat of formation + Delta-G solvation = -141.015256 kcal Electronic energy + Delta-G solvation = -14106.110558 eV Core-core repulsion = 11578.130995 eV Total energy + Delta-G solvation = -2527.979563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.17934 -39.06896 -36.54235 -34.80058 -34.13374 -30.58498 -29.30271 -28.10776 -25.11969 -21.97429 -21.41537 -20.98015 -19.13755 -18.01552 -17.44617 -16.93501 -16.41535 -15.88209 -15.54373 -15.38202 -14.46209 -14.06020 -13.82179 -13.44166 -13.30560 -13.09298 -12.77438 -12.63678 -12.51112 -12.06878 -11.97092 -11.71060 -11.61064 -11.43871 -10.92879 -10.75488 -9.88501 -9.49058 -8.32808 -6.85769 1.39864 1.42104 1.58415 2.24835 2.46036 3.04845 3.42707 3.58564 3.65464 3.70259 3.99228 4.31275 4.41040 4.48400 4.54170 4.63399 4.76565 4.87572 4.96499 5.04850 5.10337 5.23846 5.31399 5.31612 5.46101 5.87022 6.23656 6.27050 6.85781 6.99597 7.55641 8.48213 8.66144 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068396 B = 0.005884 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.279420 B = 4757.460999 C = 4954.840055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.028 3.972 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.247 1.247 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.535 3.465 10 O -0.639 6.639 11 N -0.751 5.751 12 C 0.143 3.857 13 C -0.090 4.090 14 H 0.097 0.903 15 C -0.117 4.117 16 C -0.145 4.145 17 C 0.101 3.899 18 H 0.084 0.916 19 O -0.589 6.589 20 C -0.117 4.117 21 H 0.275 0.725 22 H 0.396 0.604 23 H 0.020 0.980 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.393 0.607 30 H 0.054 0.946 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 -14.047 2.809 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.170 1.170 6 H -0.199 1.199 7 C -0.612 4.612 8 H 0.108 0.892 9 C 0.339 3.661 10 O -0.527 6.527 11 N -0.405 5.405 12 C 0.019 3.981 13 C -0.109 4.109 14 H 0.115 0.885 15 C -0.155 4.155 16 C -0.183 4.183 17 C 0.043 3.957 18 H 0.101 0.899 19 O -0.398 6.398 20 C -0.155 4.155 21 H 0.085 0.915 22 H 0.230 0.770 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.243 0.757 30 H 0.073 0.927 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.965 -13.602 2.256 16.446 hybrid contribution 0.380 0.457 0.395 0.714 sum 9.346 -13.145 2.651 16.345 Atomic orbital electron populations 1.70168 1.09775 1.29121 1.36545 1.27033 0.95487 1.05170 0.91013 0.84961 0.78876 0.74836 0.79299 1.18439 1.17048 1.19862 1.21441 0.95412 0.90224 1.54112 0.89168 1.18703 0.86375 0.84545 0.76441 1.90538 1.18253 1.88143 1.55769 1.45770 1.12243 1.04617 1.77918 1.20979 0.94582 0.84348 0.98222 1.22159 0.97843 0.92546 0.98306 0.88466 1.22500 1.00522 0.97737 0.94745 1.23069 0.99919 0.94270 1.01005 1.22495 0.86885 0.95541 0.90772 0.89857 1.86553 1.36856 1.64804 1.51604 1.22205 1.00381 0.93348 0.99544 0.91484 0.77008 0.96183 0.95303 0.90805 0.93692 0.90060 0.88703 0.75734 0.92669 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -52.05 11.91 21.84 0.26 -51.79 16 2 C 0.03 1.58 5.48 85.30 0.47 2.05 16 3 Si 1.00 41.53 29.56 68.60 2.03 43.56 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.58 -33.44 9.53 24.83 0.24 -33.21 16 8 H 0.09 4.65 7.86 -2.91 -0.02 4.63 16 9 C 0.54 32.43 7.72 86.36 0.67 33.10 16 10 O -0.64 -45.00 15.11 -4.31 -0.07 -45.06 16 11 N -0.75 -35.24 5.44 -467.41 -2.54 -37.78 16 12 C 0.14 5.97 4.96 86.38 0.43 6.40 16 13 C -0.09 -2.55 2.89 -9.72 -0.03 -2.58 16 14 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 15 C -0.12 -3.04 6.19 31.88 0.20 -2.85 16 16 C -0.15 -2.60 6.56 31.67 0.21 -2.39 16 17 C 0.10 1.98 4.26 31.32 0.13 2.12 16 18 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 19 O -0.59 -12.91 13.21 -148.98 -1.97 -14.88 16 20 C -0.12 -2.93 6.18 31.32 0.19 -2.73 16 21 H 0.28 15.63 8.29 -92.71 -0.77 14.86 16 22 H 0.40 15.70 8.42 -92.71 -0.78 14.92 16 23 H 0.02 0.94 8.02 -2.39 -0.02 0.92 16 24 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16 27 H 0.08 1.28 8.06 -2.39 -0.02 1.26 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.39 4.65 9.11 -74.06 -0.67 3.98 16 30 H 0.05 1.68 7.65 -2.39 -0.02 1.66 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -81.07 264.55 -0.10 -81.18 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.32 Total: 24.88 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 2.50 Total: -0.10 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -2.28 Total: -89.57 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -2.03 Total: -59.94 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -81.07 -0.10 -81.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236539074.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.839 kcal (2) G-P(sol) polarization free energy of solvation -81.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds