Wall clock time and date at job start Sun Mar 29 2020 22:02:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30678 * 1
3 3 Si 1.86799 * 119.99903 * 2 1
4 4 H 1.48495 * 109.47055 * 269.99814 * 3 2 1
5 5 H 1.48501 * 109.47402 * 30.00353 * 3 2 1
6 6 H 1.48500 * 109.46835 * 150.00162 * 3 2 1
7 7 C 1.40052 * 119.99646 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99924 * 180.02562 * 7 2 1
9 9 C 1.46376 * 119.99988 * 359.97438 * 7 2 1
10 10 O 1.21684 * 120.00317 * 0.02562 * 9 7 2
11 11 N 1.34781 * 119.99574 * 180.02562 * 9 7 2
12 12 C 1.46497 * 119.99573 * 180.02562 * 11 9 7
13 13 C 1.53001 * 109.46919 * 180.02562 * 12 11 9
14 14 H 1.09002 * 110.67171 * 54.30354 * 13 12 11
15 15 C 1.54885 * 110.91553 * 290.95640 * 13 12 11
16 16 C 1.54269 * 104.19677 * 203.66819 * 15 13 12
17 17 C 1.53871 * 106.59813 * 23.61322 * 16 15 13
18 18 H 1.09001 * 110.03295 * 240.71481 * 17 16 15
19 19 O 1.42895 * 110.03519 * 119.28387 * 17 16 15
20 20 C 1.54271 * 106.59748 * 359.97438 * 17 16 15
21 21 H 0.96998 * 119.99381 * 359.97438 * 1 2 3
22 22 H 0.96997 * 119.99862 * 0.02562 * 11 9 7
23 23 H 1.09002 * 109.46719 * 60.00875 * 12 11 9
24 24 H 1.08995 * 109.47322 * 300.00289 * 12 11 9
25 25 H 1.09002 * 110.48771 * 322.34655 * 15 13 12
26 26 H 1.08996 * 110.48854 * 84.99066 * 15 13 12
27 27 H 1.09000 * 110.03463 * 264.32671 * 16 15 13
28 28 H 1.08999 * 110.06955 * 142.91727 * 16 15 13
29 29 H 0.96701 * 114.00063 * 62.83040 * 19 17 16
30 30 H 1.09002 * 110.48367 * 217.71508 * 20 17 16
31 31 H 1.09003 * 110.48661 * 95.06928 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 2.4883 2.0464 -1.4000
5 1 1.4383 2.6527 0.7001
6 1 3.5383 1.4401 0.7000
7 6 2.0070 -1.2129 -0.0005
8 1 3.0870 -1.2130 -0.0001
9 6 1.2750 -2.4805 -0.0005
10 8 0.0582 -2.4805 -0.0005
11 7 1.9489 -3.6478 -0.0005
12 6 1.2164 -4.9164 -0.0011
13 6 2.2106 -6.0794 -0.0003
14 1 2.9123 -5.9852 0.8284
15 6 2.9642 -6.1634 -1.3509
16 6 3.4205 -7.6345 -1.4386
17 6 2.4687 -8.4442 -0.5408
18 1 3.0312 -8.9325 0.2550
19 8 1.7732 -9.4200 -1.3191
20 6 1.4677 -7.4368 0.0618
21 1 -0.4849 0.8401 0.0004
22 1 2.9189 -3.6477 -0.0002
23 1 0.5902 -4.9739 -0.8915
24 1 0.5893 -4.9743 0.8885
25 1 2.2953 -5.9216 -2.1768
26 1 3.8261 -5.4962 -1.3489
27 1 4.4449 -7.7298 -1.0786
28 1 3.3525 -7.9864 -2.4680
29 1 2.3489 -10.0826 -1.7250
30 1 1.2374 -7.6992 1.0944
31 1 0.5568 -7.4002 -0.5359
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000236568161.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:02:05
Heat of formation + Delta-G solvation = -111.823066 kcal
Electronic energy + Delta-G solvation = -14056.747848 eV
Core-core repulsion = 11530.034154 eV
Total energy + Delta-G solvation = -2526.713694 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-38.97604 -37.14101 -35.38788 -32.88855 -32.10628 -29.25258 -28.00378 -26.17765
-23.62782 -20.58091 -20.02513 -19.50214 -17.33677 -16.89926 -15.92827 -15.28735
-15.01402 -14.10719 -13.92614 -13.75265 -13.15530 -12.68971 -12.36233 -12.13420
-11.71275 -11.46565 -11.19205 -10.96723 -10.89543 -10.55655 -10.41442 -10.37456
-10.33879 -10.17197 -9.96733 -8.81960 -7.56906 -7.43057 -6.14881 -4.60321
3.16066 3.22593 3.26091 4.07180 4.17255 4.57782 4.62876 4.63728
4.95536 5.01658 5.36248 5.44395 5.52987 5.62037 5.73370 5.80718
5.86716 5.95169 6.04846 6.19495 6.28923 6.36946 6.60478 6.72727
7.46567 7.57186 7.98159 8.16019 8.37312 9.05991 9.59620 10.64471
10.83552
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.073182 B = 0.005739 C = 0.005466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 382.514941 B = 4877.372301 C = 5121.580358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.769 5.769
2 C 0.087 3.913
3 Si 0.907 3.093
4 H -0.272 1.272
5 H -0.279 1.279
6 H -0.265 1.265
7 C -0.547 4.547
8 H 0.067 0.933
9 C 0.554 3.446
10 O -0.582 6.582
11 N -0.767 5.767
12 C 0.142 3.858
13 C -0.101 4.101
14 H 0.079 0.921
15 C -0.114 4.114
16 C -0.157 4.157
17 C 0.099 3.901
18 H 0.055 0.945
19 O -0.567 6.567
20 C -0.110 4.110
21 H 0.268 0.732
22 H 0.379 0.621
23 H 0.049 0.951
24 H 0.048 0.952
25 H 0.070 0.930
26 H 0.068 0.932
27 H 0.065 0.935
28 H 0.070 0.930
29 H 0.373 0.627
30 H 0.071 0.929
31 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.269 -13.212 -1.280 15.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.398 5.398
2 C -0.132 4.132
3 Si 0.732 3.268
4 H -0.198 1.198
5 H -0.205 1.205
6 H -0.190 1.190
7 C -0.584 4.584
8 H 0.085 0.915
9 C 0.357 3.643
10 O -0.465 6.465
11 N -0.422 5.422
12 C 0.017 3.983
13 C -0.120 4.120
14 H 0.097 0.903
15 C -0.152 4.152
16 C -0.195 4.195
17 C 0.040 3.960
18 H 0.073 0.927
19 O -0.372 6.372
20 C -0.148 4.148
21 H 0.078 0.922
22 H 0.210 0.790
23 H 0.067 0.933
24 H 0.066 0.934
25 H 0.089 0.911
26 H 0.086 0.914
27 H 0.084 0.916
28 H 0.089 0.911
29 H 0.220 0.780
30 H 0.090 0.910
31 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 6.653 -12.754 -1.082 14.426
hybrid contribution 1.502 0.449 -0.175 1.577
sum 8.155 -12.305 -1.257 14.815
Atomic orbital electron populations
1.70030 1.07060 1.27179 1.35523 1.25711 0.94600 1.00260 0.92646
0.86383 0.80133 0.81481 0.78788 1.19774 1.20478 1.18954 1.20894
0.93536 0.89486 1.54455 0.91500 1.18221 0.87209 0.82515 0.76320
1.90596 1.14142 1.86930 1.54823 1.46102 1.08456 1.04939 1.82742
1.20831 0.93469 0.83362 1.00648 1.22335 0.97580 0.94163 0.97883
0.90295 1.22341 1.00213 0.94858 0.97771 1.22914 0.99133 0.97118
1.00340 1.22524 0.92794 0.88762 0.91913 0.92654 1.86570 1.38360
1.42898 1.69419 1.22333 0.98819 0.92807 1.00867 0.92157 0.78992
0.93298 0.93409 0.91075 0.91354 0.91636 0.91140 0.78034 0.91022
0.90040
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -23.50 11.83 55.55 0.66 -22.84 16
2 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16
3 Si 0.91 20.36 29.56 -169.99 -5.02 15.33 16
4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16
5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16
6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
7 C -0.55 -15.70 9.54 -35.63 -0.34 -16.04 16
8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16
9 C 0.55 16.13 7.75 -12.98 -0.10 16.03 16
10 O -0.58 -19.38 15.02 5.20 0.08 -19.30 16
11 N -0.77 -17.43 5.43 -61.72 -0.34 -17.76 16
12 C 0.14 2.79 5.11 -4.04 -0.02 2.77 16
13 C -0.10 -1.45 2.92 -88.64 -0.26 -1.71 16
14 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
15 C -0.11 -1.51 6.11 -25.07 -0.15 -1.67 16
16 C -0.16 -1.67 6.61 -25.61 -0.17 -1.84 16
17 C 0.10 1.10 4.26 -25.61 -0.11 0.99 16
18 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
19 O -0.57 -6.44 13.22 -35.23 -0.47 -6.90 16
20 C -0.11 -1.45 6.00 -25.08 -0.15 -1.60 16
21 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16
22 H 0.38 7.51 8.39 -40.82 -0.34 7.17 16
23 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16
24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
25 H 0.07 1.05 7.99 -51.93 -0.41 0.63 16
26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
28 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16
29 H 0.37 2.48 9.11 45.56 0.42 2.90 16
30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
31 H 0.08 1.19 7.98 -51.93 -0.41 0.77 16
LS Contribution 264.66 15.07 3.99 3.99
Total: -1.00 -35.44 264.66 -6.17 -41.61
By element:
Atomic # 1 Polarization: 10.23 SS G_CDS: -3.67 Total: 6.56 kcal
Atomic # 6 Polarization: 0.72 SS G_CDS: -1.40 Total: -0.68 kcal
Atomic # 7 Polarization: -40.93 SS G_CDS: 0.32 Total: -40.61 kcal
Atomic # 8 Polarization: -25.81 SS G_CDS: -0.39 Total: -26.20 kcal
Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 3.99 Total: 3.99 kcal
Total: -35.44 -6.17 -41.61 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000236568161.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.217 kcal
(2) G-P(sol) polarization free energy of solvation -35.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.823 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds