Wall clock time and date at job start Sun Mar 29 2020 22:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48495 * 109.47055 * 269.99814 * 3 2 1 5 5 H 1.48501 * 109.47402 * 30.00353 * 3 2 1 6 6 H 1.48500 * 109.46835 * 150.00162 * 3 2 1 7 7 C 1.40052 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00317 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99574 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99573 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46919 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.67171 * 54.30354 * 13 12 11 15 15 C 1.54885 * 110.91553 * 290.95640 * 13 12 11 16 16 C 1.54269 * 104.19677 * 203.66819 * 15 13 12 17 17 C 1.53871 * 106.59813 * 23.61322 * 16 15 13 18 18 H 1.09001 * 110.03295 * 240.71481 * 17 16 15 19 19 O 1.42895 * 110.03519 * 119.28387 * 17 16 15 20 20 C 1.54271 * 106.59748 * 359.97438 * 17 16 15 21 21 H 0.96998 * 119.99381 * 359.97438 * 1 2 3 22 22 H 0.96997 * 119.99862 * 0.02562 * 11 9 7 23 23 H 1.09002 * 109.46719 * 60.00875 * 12 11 9 24 24 H 1.08995 * 109.47322 * 300.00289 * 12 11 9 25 25 H 1.09002 * 110.48771 * 322.34655 * 15 13 12 26 26 H 1.08996 * 110.48854 * 84.99066 * 15 13 12 27 27 H 1.09000 * 110.03463 * 264.32671 * 16 15 13 28 28 H 1.08999 * 110.06955 * 142.91727 * 16 15 13 29 29 H 0.96701 * 114.00063 * 62.83040 * 19 17 16 30 30 H 1.09002 * 110.48367 * 217.71508 * 20 17 16 31 31 H 1.09003 * 110.48661 * 95.06928 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4383 2.6527 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6478 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2106 -6.0794 -0.0003 14 1 2.9123 -5.9852 0.8284 15 6 2.9642 -6.1634 -1.3509 16 6 3.4205 -7.6345 -1.4386 17 6 2.4687 -8.4442 -0.5408 18 1 3.0312 -8.9325 0.2550 19 8 1.7732 -9.4200 -1.3191 20 6 1.4677 -7.4368 0.0618 21 1 -0.4849 0.8401 0.0004 22 1 2.9189 -3.6477 -0.0002 23 1 0.5902 -4.9739 -0.8915 24 1 0.5893 -4.9743 0.8885 25 1 2.2953 -5.9216 -2.1768 26 1 3.8261 -5.4962 -1.3489 27 1 4.4449 -7.7298 -1.0786 28 1 3.3525 -7.9864 -2.4680 29 1 2.3489 -10.0826 -1.7250 30 1 1.2374 -7.6992 1.0944 31 1 0.5568 -7.4002 -0.5359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236568161.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:05 Heat of formation + Delta-G solvation = -111.823066 kcal Electronic energy + Delta-G solvation = -14056.747848 eV Core-core repulsion = 11530.034154 eV Total energy + Delta-G solvation = -2526.713694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97604 -37.14101 -35.38788 -32.88855 -32.10628 -29.25258 -28.00378 -26.17765 -23.62782 -20.58091 -20.02513 -19.50214 -17.33677 -16.89926 -15.92827 -15.28735 -15.01402 -14.10719 -13.92614 -13.75265 -13.15530 -12.68971 -12.36233 -12.13420 -11.71275 -11.46565 -11.19205 -10.96723 -10.89543 -10.55655 -10.41442 -10.37456 -10.33879 -10.17197 -9.96733 -8.81960 -7.56906 -7.43057 -6.14881 -4.60321 3.16066 3.22593 3.26091 4.07180 4.17255 4.57782 4.62876 4.63728 4.95536 5.01658 5.36248 5.44395 5.52987 5.62037 5.73370 5.80718 5.86716 5.95169 6.04846 6.19495 6.28923 6.36946 6.60478 6.72727 7.46567 7.57186 7.98159 8.16019 8.37312 9.05991 9.59620 10.64471 10.83552 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.073182 B = 0.005739 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.514941 B = 4877.372301 C = 5121.580358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.142 3.858 13 C -0.101 4.101 14 H 0.079 0.921 15 C -0.114 4.114 16 C -0.157 4.157 17 C 0.099 3.901 18 H 0.055 0.945 19 O -0.567 6.567 20 C -0.110 4.110 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.373 0.627 30 H 0.071 0.929 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 -13.212 -1.280 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.422 5.422 12 C 0.017 3.983 13 C -0.120 4.120 14 H 0.097 0.903 15 C -0.152 4.152 16 C -0.195 4.195 17 C 0.040 3.960 18 H 0.073 0.927 19 O -0.372 6.372 20 C -0.148 4.148 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.220 0.780 30 H 0.090 0.910 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.653 -12.754 -1.082 14.426 hybrid contribution 1.502 0.449 -0.175 1.577 sum 8.155 -12.305 -1.257 14.815 Atomic orbital electron populations 1.70030 1.07060 1.27179 1.35523 1.25711 0.94600 1.00260 0.92646 0.86383 0.80133 0.81481 0.78788 1.19774 1.20478 1.18954 1.20894 0.93536 0.89486 1.54455 0.91500 1.18221 0.87209 0.82515 0.76320 1.90596 1.14142 1.86930 1.54823 1.46102 1.08456 1.04939 1.82742 1.20831 0.93469 0.83362 1.00648 1.22335 0.97580 0.94163 0.97883 0.90295 1.22341 1.00213 0.94858 0.97771 1.22914 0.99133 0.97118 1.00340 1.22524 0.92794 0.88762 0.91913 0.92654 1.86570 1.38360 1.42898 1.69419 1.22333 0.98819 0.92807 1.00867 0.92157 0.78992 0.93298 0.93409 0.91075 0.91354 0.91636 0.91140 0.78034 0.91022 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.50 11.83 55.55 0.66 -22.84 16 2 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.36 29.56 -169.99 -5.02 15.33 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.70 9.54 -35.63 -0.34 -16.04 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 16.13 7.75 -12.98 -0.10 16.03 16 10 O -0.58 -19.38 15.02 5.20 0.08 -19.30 16 11 N -0.77 -17.43 5.43 -61.72 -0.34 -17.76 16 12 C 0.14 2.79 5.11 -4.04 -0.02 2.77 16 13 C -0.10 -1.45 2.92 -88.64 -0.26 -1.71 16 14 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.11 -1.51 6.11 -25.07 -0.15 -1.67 16 16 C -0.16 -1.67 6.61 -25.61 -0.17 -1.84 16 17 C 0.10 1.10 4.26 -25.61 -0.11 0.99 16 18 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 19 O -0.57 -6.44 13.22 -35.23 -0.47 -6.90 16 20 C -0.11 -1.45 6.00 -25.08 -0.15 -1.60 16 21 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 22 H 0.38 7.51 8.39 -40.82 -0.34 7.17 16 23 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.05 7.99 -51.93 -0.41 0.63 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 29 H 0.37 2.48 9.11 45.56 0.42 2.90 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.19 7.98 -51.93 -0.41 0.77 16 LS Contribution 264.66 15.07 3.99 3.99 Total: -1.00 -35.44 264.66 -6.17 -41.61 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.67 Total: 6.56 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.40 Total: -0.68 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.32 Total: -40.61 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.39 Total: -26.20 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -35.44 -6.17 -41.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236568161.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.217 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds