Wall clock time and date at job start Sun Mar 29 2020 22:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48495 * 109.47055 * 269.99814 * 3 2 1 5 5 H 1.48501 * 109.47402 * 30.00353 * 3 2 1 6 6 H 1.48500 * 109.46835 * 150.00162 * 3 2 1 7 7 C 1.40052 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00317 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99574 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99573 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46919 * 180.02562 * 12 11 9 14 14 H 1.09002 * 110.67171 * 54.30354 * 13 12 11 15 15 C 1.54885 * 110.91553 * 290.95640 * 13 12 11 16 16 C 1.54269 * 104.19677 * 203.66819 * 15 13 12 17 17 C 1.53871 * 106.59813 * 23.61322 * 16 15 13 18 18 H 1.09001 * 110.03295 * 240.71481 * 17 16 15 19 19 O 1.42895 * 110.03519 * 119.28387 * 17 16 15 20 20 C 1.54271 * 106.59748 * 359.97438 * 17 16 15 21 21 H 0.96998 * 119.99381 * 359.97438 * 1 2 3 22 22 H 0.96997 * 119.99862 * 0.02562 * 11 9 7 23 23 H 1.09002 * 109.46719 * 60.00875 * 12 11 9 24 24 H 1.08995 * 109.47322 * 300.00289 * 12 11 9 25 25 H 1.09002 * 110.48771 * 322.34655 * 15 13 12 26 26 H 1.08996 * 110.48854 * 84.99066 * 15 13 12 27 27 H 1.09000 * 110.03463 * 264.32671 * 16 15 13 28 28 H 1.08999 * 110.06955 * 142.91727 * 16 15 13 29 29 H 0.96701 * 114.00063 * 62.83040 * 19 17 16 30 30 H 1.09002 * 110.48367 * 217.71508 * 20 17 16 31 31 H 1.09003 * 110.48661 * 95.06928 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4383 2.6527 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6478 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2106 -6.0794 -0.0003 14 1 2.9123 -5.9852 0.8284 15 6 2.9642 -6.1634 -1.3509 16 6 3.4205 -7.6345 -1.4386 17 6 2.4687 -8.4442 -0.5408 18 1 3.0312 -8.9325 0.2550 19 8 1.7732 -9.4200 -1.3191 20 6 1.4677 -7.4368 0.0618 21 1 -0.4849 0.8401 0.0004 22 1 2.9189 -3.6477 -0.0002 23 1 0.5902 -4.9739 -0.8915 24 1 0.5893 -4.9743 0.8885 25 1 2.2953 -5.9216 -2.1768 26 1 3.8261 -5.4962 -1.3489 27 1 4.4449 -7.7298 -1.0786 28 1 3.3525 -7.9864 -2.4680 29 1 2.3489 -10.0826 -1.7250 30 1 1.2374 -7.6992 1.0944 31 1 0.5568 -7.4002 -0.5359 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236568161.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:05 Heat of formation + Delta-G solvation = -140.740705 kcal Electronic energy + Delta-G solvation = -14058.001811 eV Core-core repulsion = 11530.034154 eV Total energy + Delta-G solvation = -2527.967657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.15057 -39.05829 -36.61402 -34.81082 -34.14232 -30.59195 -29.25546 -28.07261 -25.13985 -21.94360 -21.26500 -21.16110 -19.17945 -17.97765 -17.43736 -16.98406 -16.40109 -15.89562 -15.40600 -15.38030 -14.39128 -14.20470 -14.01202 -13.41803 -13.20818 -13.09371 -12.73092 -12.66458 -12.56989 -12.07366 -11.96135 -11.74776 -11.62504 -11.33421 -10.93304 -10.80215 -9.88163 -9.47927 -8.29210 -6.86174 1.40605 1.42597 1.58067 2.25234 2.47118 3.01159 3.46633 3.57694 3.62598 3.67342 4.02538 4.30026 4.39697 4.46801 4.54495 4.59285 4.74969 4.87151 4.95735 5.02826 5.11054 5.21023 5.31759 5.34747 5.44048 5.87513 6.24550 6.27383 6.86343 6.97472 7.56572 8.49342 8.67587 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.073182 B = 0.005739 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.514941 B = 4877.372301 C = 5121.580358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.533 3.467 10 O -0.637 6.637 11 N -0.751 5.751 12 C 0.144 3.856 13 C -0.089 4.089 14 H 0.098 0.902 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.103 3.897 18 H 0.082 0.918 19 O -0.587 6.587 20 C -0.114 4.114 21 H 0.274 0.726 22 H 0.396 0.604 23 H 0.024 0.976 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.394 0.606 30 H 0.081 0.919 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -13.529 -1.137 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.610 4.610 8 H 0.108 0.892 9 C 0.338 3.662 10 O -0.525 6.525 11 N -0.406 5.406 12 C 0.019 3.981 13 C -0.108 4.108 14 H 0.116 0.884 15 C -0.155 4.155 16 C -0.185 4.185 17 C 0.045 3.955 18 H 0.099 0.901 19 O -0.396 6.396 20 C -0.152 4.152 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.244 0.756 30 H 0.100 0.900 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.543 -13.139 -0.949 16.266 hybrid contribution 0.578 0.470 -0.234 0.781 sum 10.121 -12.669 -1.183 16.258 Atomic orbital electron populations 1.70209 1.09689 1.28963 1.36568 1.27039 0.95525 1.05137 0.91131 0.84973 0.78759 0.74813 0.79431 1.18595 1.19835 1.17004 1.21458 0.94815 0.90021 1.54733 0.89199 1.18700 0.86856 0.84585 0.76096 1.90548 1.16439 1.88094 1.57370 1.45752 1.09270 1.04572 1.80985 1.20907 0.94501 0.84130 0.98557 1.22222 0.96648 0.92372 0.99519 0.88368 1.22344 0.99763 0.97429 0.95922 1.22869 1.00208 0.94480 1.00936 1.22473 0.91900 0.88507 0.92629 0.90050 1.86520 1.39733 1.43608 1.69746 1.22344 0.98518 0.92889 1.01473 0.91579 0.77008 0.95788 0.95256 0.93449 0.90648 0.89096 0.90507 0.75574 0.89999 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.69 11.83 21.84 0.26 -51.43 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.57 -33.10 9.54 24.83 0.24 -32.86 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 9 C 0.53 32.01 7.75 86.36 0.67 32.68 16 10 O -0.64 -44.46 15.02 -4.30 -0.06 -44.53 16 11 N -0.75 -34.69 5.43 -467.41 -2.54 -37.23 16 12 C 0.14 5.85 5.11 86.38 0.44 6.29 16 13 C -0.09 -2.48 2.92 -9.51 -0.03 -2.51 16 14 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.12 -2.93 6.11 31.67 0.19 -2.74 16 16 C -0.15 -2.67 6.61 31.32 0.21 -2.46 16 17 C 0.10 2.01 4.26 31.32 0.13 2.14 16 18 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 19 O -0.59 -11.98 13.22 -148.98 -1.97 -13.95 16 20 C -0.11 -2.89 6.00 31.66 0.19 -2.70 16 21 H 0.27 15.52 8.29 -92.71 -0.77 14.76 16 22 H 0.40 15.43 8.39 -92.71 -0.78 14.65 16 23 H 0.02 1.08 8.05 -2.39 -0.02 1.06 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.40 7.99 -2.39 -0.02 1.38 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.33 7.95 -2.39 -0.02 1.31 16 29 H 0.39 4.10 9.11 -74.06 -0.67 3.43 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.73 7.98 -2.39 -0.02 1.71 16 Total: -1.00 -79.76 264.66 -0.09 -79.85 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.32 Total: 24.16 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 2.51 Total: -0.18 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -2.28 Total: -88.66 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -2.03 Total: -58.48 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -79.76 -0.09 -79.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236568161.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.887 kcal (2) G-P(sol) polarization free energy of solvation -79.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds