Wall clock time and date at job start Sun Mar 29 2020 22:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 120.00320 * 2 1 4 4 H 1.48499 * 109.47013 * 270.00146 * 3 2 1 5 5 H 1.48500 * 109.47087 * 29.99680 * 3 2 1 6 6 H 1.48492 * 109.47375 * 150.00093 * 3 2 1 7 7 C 1.40049 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00107 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99910 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00044 * 179.97438 * 9 7 2 12 12 C 1.46493 * 120.00016 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47303 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.05425 * 306.42281 * 13 12 11 15 15 C 1.54266 * 110.02878 * 67.83389 * 13 12 11 16 16 C 1.55238 * 104.23333 * 142.89793 * 15 13 12 17 17 C 1.54894 * 102.58338 * 322.08174 * 16 15 13 18 18 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 19 19 O 1.42898 * 110.48190 * 156.67678 * 17 16 15 20 20 C 1.53869 * 110.03216 * 184.99765 * 13 12 11 21 21 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99796 * 359.97438 * 11 9 7 23 23 H 1.09008 * 109.47605 * 59.99812 * 12 11 9 24 24 H 1.08999 * 109.47354 * 299.99810 * 12 11 9 25 25 H 1.09005 * 110.48526 * 261.57665 * 15 13 12 26 26 H 1.09007 * 110.48724 * 24.08149 * 15 13 12 27 27 H 1.08996 * 110.89448 * 203.79739 * 16 15 13 28 28 H 1.08993 * 110.76342 * 80.31404 * 16 15 13 29 29 H 0.96702 * 114.00194 * 63.24243 * 19 17 16 30 30 H 1.09001 * 110.02983 * 121.43438 * 20 13 12 31 31 H 1.08995 * 110.03881 * 0.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 1.2163 -4.9164 0.0011 13 6 2.2105 -6.0795 0.0003 14 1 2.9148 -5.9685 -0.8241 15 6 2.9705 -6.1257 1.3420 16 6 3.1343 -7.6413 1.6358 17 6 1.7874 -8.2277 1.1448 18 1 1.0127 -8.0874 1.8987 19 8 1.9310 -9.6139 0.8289 20 6 1.4582 -7.4158 -0.1250 21 1 -0.4850 0.8401 0.0004 22 1 2.9188 -3.6478 0.0002 23 1 0.5892 -4.9744 -0.8886 24 1 0.5900 -4.9740 0.8913 25 1 3.9458 -5.6487 1.2446 26 1 2.3880 -5.6439 2.1273 27 1 3.2664 -7.8182 2.7031 28 1 3.9666 -8.0571 1.0681 29 1 2.1662 -10.1675 1.5861 30 1 1.7975 -7.9536 -1.0104 31 1 0.3849 -7.2360 -0.1858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236569214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:08 Heat of formation + Delta-G solvation = -111.628500 kcal Electronic energy + Delta-G solvation = -14073.127139 eV Core-core repulsion = 11546.421882 eV Total energy + Delta-G solvation = -2526.705257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.97445 -37.13474 -35.44911 -32.88256 -32.10704 -29.25231 -27.93743 -26.17713 -23.59149 -20.89492 -19.60731 -19.56702 -17.61977 -17.10421 -15.47426 -15.21461 -14.92210 -14.06049 -13.93446 -13.73994 -13.58135 -12.68240 -12.29698 -12.15042 -11.74752 -11.32185 -11.20098 -10.97521 -10.92800 -10.69168 -10.48335 -10.36218 -10.27962 -10.17004 -9.88578 -8.82914 -7.58252 -7.44714 -6.15952 -4.61360 3.15458 3.22074 3.25538 4.07035 4.15179 4.61623 4.62009 4.63788 4.92535 5.07300 5.30042 5.46819 5.56401 5.63597 5.70870 5.81592 5.85207 5.98707 6.05844 6.17805 6.27633 6.36140 6.60117 6.69897 7.45650 7.56196 7.97056 8.14813 8.36323 9.05050 9.58314 10.63282 10.82269 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.075517 B = 0.005746 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.686545 B = 4871.442882 C = 5100.751409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.140 3.860 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.116 4.116 16 C -0.157 4.157 17 C 0.096 3.904 18 H 0.062 0.938 19 O -0.568 6.568 20 C -0.110 4.110 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.374 0.626 30 H 0.074 0.926 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -12.625 2.991 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.423 5.423 12 C 0.015 3.985 13 C -0.119 4.119 14 H 0.095 0.905 15 C -0.154 4.154 16 C -0.194 4.194 17 C 0.037 3.963 18 H 0.080 0.920 19 O -0.373 6.373 20 C -0.148 4.148 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.221 0.779 30 H 0.093 0.907 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.464 -12.294 2.388 13.664 hybrid contribution 1.083 0.629 0.578 1.380 sum 6.547 -11.665 2.966 13.702 Atomic orbital electron populations 1.70030 1.07064 1.27184 1.35521 1.25708 0.94601 1.00268 0.92634 0.86381 0.80133 0.81462 0.78806 1.19763 1.20480 1.18948 1.20896 0.93551 0.89489 1.54431 0.91491 1.18221 0.87205 0.82525 0.76317 1.90595 1.14141 1.86945 1.54865 1.46113 1.08487 1.04952 1.82725 1.21010 0.93490 0.83516 1.00518 1.21968 0.97587 0.94202 0.98149 0.90495 1.22407 1.00730 0.94830 0.97419 1.23262 0.98285 0.97078 1.00814 1.22770 0.95857 0.80535 0.97105 0.91984 1.86512 1.93081 1.18706 1.39043 1.22082 1.01121 0.94288 0.97347 0.92157 0.78955 0.93461 0.93385 0.91312 0.90829 0.91638 0.90799 0.77915 0.90707 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.40 11.83 55.55 0.66 -22.75 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.64 9.54 -35.63 -0.34 -15.98 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 16.04 7.75 -12.99 -0.10 15.94 16 10 O -0.58 -19.26 15.02 5.20 0.08 -19.19 16 11 N -0.77 -17.32 5.40 -61.72 -0.33 -17.66 16 12 C 0.14 2.71 4.73 -4.04 -0.02 2.69 16 13 C -0.10 -1.44 2.96 -89.50 -0.27 -1.71 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.50 6.09 -24.88 -0.15 -1.65 16 16 C -0.16 -1.68 6.65 -24.55 -0.16 -1.84 16 17 C 0.10 1.11 4.22 -25.07 -0.11 1.01 16 18 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 19 O -0.57 -6.35 13.37 -35.23 -0.47 -6.82 16 20 C -0.11 -1.46 6.21 -25.62 -0.16 -1.61 16 21 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 22 H 0.38 7.50 8.33 -40.82 -0.34 7.16 16 23 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.05 0.99 8.00 -51.93 -0.42 0.57 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.37 2.48 9.12 45.56 0.42 2.90 16 30 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 LS Contribution 264.09 15.07 3.98 3.98 Total: -1.00 -35.12 264.09 -6.16 -41.28 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.64 Total: 6.68 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.40 Total: -0.80 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.32 Total: -40.40 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.39 Total: -26.01 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -35.12 -6.16 -41.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236569214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.352 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds