Wall clock time and date at job start Sun Mar 29 2020 22:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 120.00320 * 2 1 4 4 H 1.48499 * 109.47013 * 270.00146 * 3 2 1 5 5 H 1.48500 * 109.47087 * 29.99680 * 3 2 1 6 6 H 1.48492 * 109.47375 * 150.00093 * 3 2 1 7 7 C 1.40049 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00107 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99910 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00044 * 179.97438 * 9 7 2 12 12 C 1.46493 * 120.00016 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47303 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.05425 * 306.42281 * 13 12 11 15 15 C 1.54266 * 110.02878 * 67.83389 * 13 12 11 16 16 C 1.55238 * 104.23333 * 142.89793 * 15 13 12 17 17 C 1.54894 * 102.58338 * 322.08174 * 16 15 13 18 18 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 19 19 O 1.42898 * 110.48190 * 156.67678 * 17 16 15 20 20 C 1.53869 * 110.03216 * 184.99765 * 13 12 11 21 21 H 0.97005 * 119.99554 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99796 * 359.97438 * 11 9 7 23 23 H 1.09008 * 109.47605 * 59.99812 * 12 11 9 24 24 H 1.08999 * 109.47354 * 299.99810 * 12 11 9 25 25 H 1.09005 * 110.48526 * 261.57665 * 15 13 12 26 26 H 1.09007 * 110.48724 * 24.08149 * 15 13 12 27 27 H 1.08996 * 110.89448 * 203.79739 * 16 15 13 28 28 H 1.08993 * 110.76342 * 80.31404 * 16 15 13 29 29 H 0.96702 * 114.00194 * 63.24243 * 19 17 16 30 30 H 1.09001 * 110.02983 * 121.43438 * 20 13 12 31 31 H 1.08995 * 110.03881 * 0.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0005 12 6 1.2163 -4.9164 0.0011 13 6 2.2105 -6.0795 0.0003 14 1 2.9148 -5.9685 -0.8241 15 6 2.9705 -6.1257 1.3420 16 6 3.1343 -7.6413 1.6358 17 6 1.7874 -8.2277 1.1448 18 1 1.0127 -8.0874 1.8987 19 8 1.9310 -9.6139 0.8289 20 6 1.4582 -7.4158 -0.1250 21 1 -0.4850 0.8401 0.0004 22 1 2.9188 -3.6478 0.0002 23 1 0.5892 -4.9744 -0.8886 24 1 0.5900 -4.9740 0.8913 25 1 3.9458 -5.6487 1.2446 26 1 2.3880 -5.6439 2.1273 27 1 3.2664 -7.8182 2.7031 28 1 3.9666 -8.0571 1.0681 29 1 2.1662 -10.1675 1.5861 30 1 1.7975 -7.9536 -1.0104 31 1 0.3849 -7.2360 -0.1858 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236569214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:08 Heat of formation + Delta-G solvation = -140.063596 kcal Electronic energy + Delta-G solvation = -14074.360177 eV Core-core repulsion = 11546.421882 eV Total energy + Delta-G solvation = -2527.938296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.18279 -39.02432 -36.66386 -34.80617 -34.12376 -30.58600 -29.21407 -28.05605 -25.11605 -22.02171 -21.50258 -20.81780 -19.09742 -18.52317 -17.43433 -16.56272 -16.40050 -15.87684 -15.36175 -15.06715 -14.72772 -14.36221 -13.98064 -13.44292 -13.33625 -13.01492 -12.74254 -12.62833 -12.41520 -12.10903 -11.99227 -11.76450 -11.57850 -11.44223 -10.93245 -10.77335 -9.87890 -9.47419 -8.29140 -6.85921 1.40743 1.42496 1.57951 2.25320 2.47287 3.03801 3.38040 3.59192 3.62766 3.73441 3.86067 4.28180 4.41553 4.50317 4.51238 4.61549 4.78556 4.89070 4.93661 4.98591 5.08473 5.27393 5.31759 5.32233 5.42805 5.87812 6.24538 6.28017 6.86623 6.93366 7.56395 8.49421 8.67631 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.075517 B = 0.005746 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.686545 B = 4871.442882 C = 5100.751409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.142 3.858 13 C -0.088 4.088 14 H 0.086 0.914 15 C -0.117 4.117 16 C -0.143 4.143 17 C 0.099 3.901 18 H 0.065 0.935 19 O -0.580 6.580 20 C -0.112 4.112 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.027 0.973 24 H 0.031 0.969 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.395 0.605 30 H 0.078 0.922 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 -12.804 3.437 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.018 3.982 13 C -0.107 4.107 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.181 4.181 17 C 0.040 3.960 18 H 0.083 0.917 19 O -0.389 6.389 20 C -0.151 4.151 21 H 0.084 0.916 22 H 0.229 0.771 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.245 0.755 30 H 0.097 0.903 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.896 -12.540 2.847 15.090 hybrid contribution 0.314 0.592 0.430 0.796 sum 8.210 -11.948 3.277 14.863 Atomic orbital electron populations 1.70203 1.09645 1.28950 1.36567 1.27016 0.95521 1.05080 0.91142 0.84985 0.78762 0.74892 0.79422 1.18624 1.19816 1.17069 1.21456 0.94794 0.90080 1.54741 0.89292 1.18674 0.86850 0.84551 0.76088 1.90547 1.16372 1.88091 1.57362 1.45772 1.09272 1.04642 1.80988 1.21099 0.94409 0.84013 0.98713 1.21855 0.96573 0.92508 0.99731 0.89587 1.22395 1.00534 0.96849 0.95675 1.23184 0.97886 0.94739 1.02245 1.22656 0.96552 0.80862 0.95910 0.91707 1.86460 1.93217 1.18520 1.40687 1.22058 1.00331 0.93902 0.98772 0.91579 0.77074 0.95511 0.95064 0.90305 0.92398 0.89595 0.89943 0.75499 0.90340 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.32 11.83 21.84 0.26 -51.06 16 2 C 0.03 1.54 5.50 85.30 0.47 2.00 16 3 Si 1.00 41.14 29.56 68.60 2.03 43.16 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 7 C -0.57 -32.96 9.54 24.83 0.24 -32.73 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 9 C 0.53 31.77 7.75 86.36 0.67 32.44 16 10 O -0.64 -43.92 15.02 -4.31 -0.06 -43.99 16 11 N -0.75 -34.40 5.40 -467.40 -2.52 -36.92 16 12 C 0.14 5.66 4.73 86.38 0.41 6.07 16 13 C -0.09 -2.46 2.96 -10.07 -0.03 -2.49 16 14 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 15 C -0.12 -2.81 6.09 31.79 0.19 -2.62 16 16 C -0.14 -2.64 6.65 32.01 0.21 -2.43 16 17 C 0.10 2.09 4.22 31.67 0.13 2.23 16 18 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 19 O -0.58 -11.50 13.37 -148.98 -1.99 -13.49 16 20 C -0.11 -2.87 6.21 31.32 0.19 -2.67 16 21 H 0.27 15.43 8.29 -92.70 -0.77 14.66 16 22 H 0.40 15.38 8.33 -92.71 -0.77 14.61 16 23 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.03 1.34 8.00 -2.39 -0.02 1.32 16 25 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.06 1.59 7.76 -2.38 -0.02 1.57 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.40 4.06 9.12 -74.06 -0.68 3.39 16 30 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.06 1.75 7.67 -2.39 -0.02 1.73 16 Total: -1.00 -77.89 264.09 -0.12 -78.01 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.31 Total: 24.48 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 2.49 Total: -0.20 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.26 Total: -87.98 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -2.06 Total: -57.48 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -77.89 -0.12 -78.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236569214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.053 kcal (2) G-P(sol) polarization free energy of solvation -77.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds