Wall clock time and date at job start Sun Mar 29 2020 21:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86796 * 120.00193 * 2 1 4 4 H 1.48502 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47117 * 300.00126 * 3 2 1 6 6 H 1.48502 * 109.47094 * 60.00233 * 3 2 1 7 7 C 1.39911 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00302 * 162.82597 * 7 2 1 9 9 C 1.41192 * 120.00088 * 342.82255 * 7 2 1 10 10 C 1.41209 * 119.51205 * 153.40125 * 9 7 2 11 11 C 1.36203 * 120.65041 * 180.02562 * 10 9 7 12 12 N 1.39301 * 120.29794 * 180.02562 * 11 10 9 13 13 C 1.46079 * 119.39584 * 359.95051 * 11 10 9 14 14 C 1.39889 * 121.16194 * 180.02562 * 13 11 10 15 15 C 1.36519 * 119.72856 * 179.97438 * 14 13 11 16 16 C 1.39243 * 120.99419 * 359.97438 * 15 14 13 17 17 C 1.36200 * 120.94253 * 0.02865 * 16 15 14 18 18 C 1.40840 * 119.60979 * 359.95111 * 17 16 15 19 19 C 1.39905 * 121.15982 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.67960 * 359.97438 * 10 9 7 22 22 H 0.97004 * 119.99894 * 179.97438 * 12 11 10 23 23 H 0.97000 * 120.00606 * 359.93274 * 12 11 10 24 24 H 1.08004 * 120.13149 * 359.97438 * 14 13 11 25 25 H 1.08004 * 119.50617 * 179.71874 * 15 14 13 26 26 H 1.07997 * 119.53230 * 180.02562 * 16 15 14 27 27 H 1.08005 * 120.19508 * 179.97438 * 17 16 15 28 28 H 1.08006 * 119.99223 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0519 -1.2324 -0.2767 9 6 1.3493 -2.4073 0.3600 10 6 1.8145 -3.6390 -0.1505 11 6 1.1962 -4.8063 0.1817 12 7 1.6616 -6.0172 -0.3258 13 6 0.0418 -4.7769 1.0763 14 6 -0.6206 -5.9534 1.4421 15 6 -1.6962 -5.8920 2.2805 16 6 -2.1471 -4.6731 2.7805 17 6 -1.5276 -3.5070 2.4465 18 6 -0.4144 -3.5326 1.5841 19 6 0.2466 -2.3545 1.2202 20 1 -0.4850 0.8400 0.0004 21 1 2.6683 -3.6555 -0.8116 22 1 1.2182 -6.8460 -0.0861 23 1 2.4286 -6.0316 -0.9195 24 1 -0.2824 -6.9064 1.0628 25 1 -2.2078 -6.8022 2.5570 26 1 -3.0001 -4.6520 3.4425 27 1 -1.8877 -2.5683 2.8410 28 1 -0.0949 -1.4037 1.6023 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238655681.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:15 Heat of formation + Delta-G solvation = 26.557572 kcal Electronic energy + Delta-G solvation = -13215.947989 eV Core-core repulsion = 11002.543849 eV Total energy + Delta-G solvation = -2213.404140 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.79626 -35.73710 -34.54716 -32.35515 -29.93348 -29.39149 -27.05254 -25.11075 -21.98905 -21.33024 -20.14374 -17.71014 -16.68591 -16.00084 -15.25988 -14.95727 -14.22424 -13.94037 -12.95758 -12.85271 -12.50249 -12.34507 -11.84539 -11.47464 -11.14772 -10.88061 -10.77098 -10.62770 -10.37970 -9.70460 -9.47731 -9.44841 -8.83680 -8.10569 -7.39330 -6.79529 -6.03277 -4.32359 1.94592 2.37951 2.99352 3.06820 3.11619 3.53349 3.90292 4.14369 4.63153 4.87912 5.69751 5.76117 5.79790 5.91141 6.25027 6.42141 6.70481 6.82043 6.88230 7.05091 7.11758 7.22878 7.38719 7.48238 7.59773 7.67350 7.93669 8.14314 8.24690 8.33943 8.52886 8.67555 8.87788 8.97263 10.14919 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.009697 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.219564 B = 2886.920360 C = 3539.690938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.143 3.857 10 C -0.249 4.249 11 C 0.216 3.784 12 N -0.886 5.886 13 C -0.170 4.170 14 C -0.069 4.069 15 C -0.209 4.209 16 C -0.112 4.112 17 C -0.146 4.146 18 C 0.024 3.976 19 C -0.243 4.243 20 H 0.281 0.719 21 H 0.096 0.904 22 H 0.386 0.614 23 H 0.390 0.610 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -4.817 0.953 4.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.479 4.479 8 H 0.097 0.903 9 C 0.140 3.860 10 C -0.275 4.275 11 C 0.114 3.886 12 N -0.426 5.426 13 C -0.172 4.172 14 C -0.088 4.088 15 C -0.228 4.228 16 C -0.130 4.130 17 C -0.164 4.164 18 C 0.023 3.977 19 C -0.264 4.264 20 H 0.092 0.908 21 H 0.114 0.886 22 H 0.214 0.786 23 H 0.218 0.782 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.293 -4.593 0.958 4.701 hybrid contribution 0.394 0.423 -0.255 0.632 sum 0.688 -4.169 0.703 4.284 Atomic orbital electron populations 1.69888 1.07599 1.29197 1.33402 1.25934 0.94747 1.01353 0.92432 0.86278 0.80992 0.80953 0.78625 1.18359 1.19971 1.19598 1.19668 0.97822 0.91264 1.39187 0.90324 1.17205 0.90620 0.91012 0.87185 1.20317 1.05628 0.91792 1.09720 1.18345 0.92268 0.85734 0.92267 1.42243 1.37412 1.06033 1.56895 1.18250 0.99469 0.93413 1.06112 1.20431 0.95458 0.95977 0.96919 1.20183 1.00891 0.96761 1.04949 1.20466 0.99318 0.93045 1.00149 1.20872 0.97407 0.97124 1.01004 1.17778 0.93438 0.92642 0.93812 1.20974 1.03080 0.95599 1.06762 0.90806 0.88559 0.78646 0.78235 0.88559 0.88473 0.88320 0.87410 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.06 11.01 55.55 0.61 -19.45 15 2 C 0.07 1.86 5.10 -17.35 -0.09 1.77 15 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 7 C -0.45 -11.77 8.99 -37.84 -0.34 -12.12 15 8 H 0.08 1.96 7.90 -52.48 -0.41 1.54 15 9 C 0.14 3.81 5.55 -107.01 -0.59 3.22 15 10 C -0.25 -5.98 9.48 -39.19 -0.37 -6.35 15 11 C 0.22 4.75 6.88 -82.06 -0.56 4.19 15 12 N -0.89 -14.79 9.03 33.32 0.30 -14.49 15 13 C -0.17 -3.92 5.90 -104.73 -0.62 -4.53 15 14 C -0.07 -1.39 9.54 -39.58 -0.38 -1.77 15 15 C -0.21 -4.00 9.96 -39.83 -0.40 -4.40 15 16 C -0.11 -2.20 9.95 -39.94 -0.40 -2.60 15 17 C -0.15 -3.23 9.78 -39.33 -0.38 -3.62 15 18 C 0.02 0.60 5.74 -106.88 -0.61 -0.01 15 19 C -0.24 -6.49 8.38 -38.32 -0.32 -6.81 15 20 H 0.28 6.56 8.30 -40.82 -0.34 6.22 15 21 H 0.10 2.14 8.06 -52.49 -0.42 1.71 15 22 H 0.39 5.60 7.07 -40.82 -0.29 5.31 15 23 H 0.39 5.60 8.83 -40.82 -0.36 5.23 15 24 H 0.10 1.61 6.53 -52.48 -0.34 1.27 15 25 H 0.10 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.10 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.11 2.25 8.06 -52.48 -0.42 1.83 15 28 H 0.12 3.25 6.20 -52.48 -0.33 2.92 15 LS Contribution 243.25 15.07 3.67 3.67 Total: -1.00 -28.35 243.25 -8.08 -36.43 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -2.56 Total: 13.55 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -5.07 Total: -33.04 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.91 Total: -33.95 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.35 -8.08 -36.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655681.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.983 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds