Wall clock time and date at job start Sun Mar 29 2020 21:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86796 * 120.00193 * 2 1 4 4 H 1.48502 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47117 * 300.00126 * 3 2 1 6 6 H 1.48502 * 109.47094 * 60.00233 * 3 2 1 7 7 C 1.39911 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00302 * 162.82597 * 7 2 1 9 9 C 1.41192 * 120.00088 * 342.82255 * 7 2 1 10 10 C 1.41209 * 119.51205 * 153.40125 * 9 7 2 11 11 C 1.36203 * 120.65041 * 180.02562 * 10 9 7 12 12 N 1.39301 * 120.29794 * 180.02562 * 11 10 9 13 13 C 1.46079 * 119.39584 * 359.95051 * 11 10 9 14 14 C 1.39889 * 121.16194 * 180.02562 * 13 11 10 15 15 C 1.36519 * 119.72856 * 179.97438 * 14 13 11 16 16 C 1.39243 * 120.99419 * 359.97438 * 15 14 13 17 17 C 1.36200 * 120.94253 * 0.02865 * 16 15 14 18 18 C 1.40840 * 119.60979 * 359.95111 * 17 16 15 19 19 C 1.39905 * 121.15982 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.67960 * 359.97438 * 10 9 7 22 22 H 0.97004 * 119.99894 * 179.97438 * 12 11 10 23 23 H 0.97000 * 120.00606 * 359.93274 * 12 11 10 24 24 H 1.08004 * 120.13149 * 359.97438 * 14 13 11 25 25 H 1.08004 * 119.50617 * 179.71874 * 15 14 13 26 26 H 1.07997 * 119.53230 * 180.02562 * 16 15 14 27 27 H 1.08005 * 120.19508 * 179.97438 * 17 16 15 28 28 H 1.08006 * 119.99223 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0519 -1.2324 -0.2767 9 6 1.3493 -2.4073 0.3600 10 6 1.8145 -3.6390 -0.1505 11 6 1.1962 -4.8063 0.1817 12 7 1.6616 -6.0172 -0.3258 13 6 0.0418 -4.7769 1.0763 14 6 -0.6206 -5.9534 1.4421 15 6 -1.6962 -5.8920 2.2805 16 6 -2.1471 -4.6731 2.7805 17 6 -1.5276 -3.5070 2.4465 18 6 -0.4144 -3.5326 1.5841 19 6 0.2466 -2.3545 1.2202 20 1 -0.4850 0.8400 0.0004 21 1 2.6683 -3.6555 -0.8116 22 1 1.2182 -6.8460 -0.0861 23 1 2.4286 -6.0316 -0.9195 24 1 -0.2824 -6.9064 1.0628 25 1 -2.2078 -6.8022 2.5570 26 1 -3.0001 -4.6520 3.4425 27 1 -1.8877 -2.5683 2.8410 28 1 -0.0949 -1.4037 1.6023 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238655681.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:15 Heat of formation + Delta-G solvation = 9.901770 kcal Electronic energy + Delta-G solvation = -13216.670239 eV Core-core repulsion = 11002.543849 eV Total energy + Delta-G solvation = -2214.126390 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 213.085 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51254 -37.43951 -36.26716 -34.12527 -31.58021 -31.13277 -28.80081 -26.93009 -23.69196 -23.08328 -21.87981 -19.48490 -18.27052 -17.78559 -16.90161 -16.64174 -15.84515 -15.62660 -14.66751 -14.49525 -14.23968 -14.10738 -13.52369 -13.15794 -12.79372 -12.61218 -12.45462 -12.34485 -12.00340 -11.44334 -11.25847 -11.21722 -10.63752 -9.70730 -9.19388 -8.62573 -7.74711 -6.26846 0.25102 0.64659 1.36795 1.40387 1.54132 1.74281 2.20697 2.39656 3.08276 3.16463 3.89319 4.12195 4.22577 4.37388 4.66928 4.79627 4.98473 5.05370 5.21948 5.23774 5.31079 5.56892 5.68978 5.77750 5.90121 5.92954 6.12982 6.30203 6.50901 6.61282 6.84233 6.97977 7.09204 7.21372 8.34818 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.009697 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.219564 B = 2886.920360 C = 3539.690938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.490 4.490 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.282 4.282 11 C 0.231 3.769 12 N -0.862 5.862 13 C -0.190 4.190 14 C -0.072 4.072 15 C -0.198 4.198 16 C -0.099 4.099 17 C -0.176 4.176 18 C 0.002 3.998 19 C -0.280 4.280 20 H 0.287 0.713 21 H 0.105 0.895 22 H 0.402 0.598 23 H 0.405 0.595 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.105 0.895 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -7.109 1.322 7.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.519 4.519 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.308 4.308 11 C 0.126 3.874 12 N -0.403 5.403 13 C -0.193 4.193 14 C -0.090 4.090 15 C -0.217 4.217 16 C -0.116 4.116 17 C -0.194 4.194 18 C 0.001 3.999 19 C -0.302 4.302 20 H 0.097 0.903 21 H 0.123 0.877 22 H 0.232 0.768 23 H 0.234 0.766 24 H 0.153 0.847 25 H 0.159 0.841 26 H 0.154 0.846 27 H 0.124 0.876 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.165 -6.946 1.312 7.071 hybrid contribution 0.387 0.841 -0.284 0.968 sum 0.223 -6.105 1.028 6.195 Atomic orbital electron populations 1.69968 1.09204 1.30346 1.34605 1.26817 0.95457 1.04662 0.91354 0.85151 0.79506 0.76094 0.78886 1.17874 1.18932 1.19101 1.19917 0.98089 0.92487 1.41401 0.90353 1.17562 0.91057 0.92464 0.87524 1.20372 1.07022 0.91995 1.11440 1.18374 0.91252 0.86824 0.90966 1.42106 1.37438 1.04844 1.55932 1.18611 1.00224 0.94015 1.06481 1.20850 0.95253 0.96257 0.96654 1.20756 0.99950 0.98032 1.02946 1.20936 0.99313 0.92257 0.99131 1.21007 0.97818 0.98596 1.02004 1.18106 0.94246 0.92969 0.94536 1.20841 1.04845 0.95535 1.08956 0.90280 0.87733 0.76791 0.76571 0.84677 0.84109 0.84637 0.87641 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.64 11.01 21.82 0.24 -44.40 15 2 C 0.03 1.70 5.10 85.25 0.43 2.14 15 3 Si 0.98 39.07 29.59 68.60 2.03 41.10 15 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.26 -9.99 7.11 99.48 0.71 -9.29 15 6 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 7 C -0.49 -27.12 8.99 23.40 0.21 -26.91 15 8 H 0.08 4.13 7.90 -2.91 -0.02 4.10 15 9 C 0.12 6.60 5.55 -21.41 -0.12 6.48 15 10 C -0.28 -13.94 9.48 22.53 0.21 -13.72 15 11 C 0.23 9.97 6.88 39.52 0.27 10.24 15 12 N -0.86 -26.34 9.03 -48.49 -0.44 -26.78 15 13 C -0.19 -8.58 5.90 -19.93 -0.12 -8.70 15 14 C -0.07 -2.59 9.54 22.27 0.21 -2.38 15 15 C -0.20 -6.62 9.96 22.11 0.22 -6.40 15 16 C -0.10 -3.57 9.95 22.04 0.22 -3.35 15 17 C -0.18 -7.81 9.78 22.43 0.22 -7.59 15 18 C 0.00 0.11 5.74 -21.33 -0.12 -0.01 15 19 C -0.28 -15.94 8.38 23.09 0.19 -15.74 15 20 H 0.29 14.12 8.30 -92.71 -0.77 13.35 15 21 H 0.10 4.77 8.06 -2.91 -0.02 4.75 15 22 H 0.40 9.93 7.07 -92.71 -0.66 9.27 15 23 H 0.40 10.49 8.83 -92.71 -0.82 9.67 15 24 H 0.14 3.75 6.53 -2.91 -0.02 3.73 15 25 H 0.14 3.56 8.06 -2.91 -0.02 3.53 15 26 H 0.14 3.89 8.06 -2.91 -0.02 3.86 15 27 H 0.11 4.57 8.06 -2.91 -0.02 4.54 15 28 H 0.09 5.50 6.20 -2.91 -0.02 5.48 15 Total: -1.00 -65.05 243.25 3.39 -61.65 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.28 Total: 34.37 kcal Atomic # 6 Polarization: -67.78 SS G_CDS: 1.84 Total: -65.95 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -0.20 Total: -71.18 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -65.05 3.39 -61.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655681.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.557 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds