Wall clock time and date at job start Sun Mar 29 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48499 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47229 * 299.99921 * 3 2 1 6 6 H 1.48496 * 109.47023 * 60.00044 * 3 2 1 7 7 C 1.40049 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99715 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00136 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99822 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46963 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47067 * 300.00341 * 16 15 14 18 18 O 1.42900 * 109.47442 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47092 * 60.00194 * 16 15 14 20 20 C 1.53002 * 109.46799 * 205.00309 * 12 11 9 21 21 H 0.96998 * 120.00178 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99716 * 0.02562 * 11 9 7 23 23 H 1.09001 * 109.47194 * 299.99493 * 14 12 11 24 24 H 1.08992 * 109.47399 * 59.99666 * 14 12 11 25 25 H 1.09000 * 109.47437 * 180.02562 * 15 14 12 26 26 H 1.09002 * 109.47508 * 59.99571 * 15 14 12 27 27 H 0.96697 * 113.99983 * 59.99480 * 18 16 15 28 28 H 1.09001 * 109.47375 * 180.02562 * 19 16 15 29 29 H 1.09002 * 109.47497 * 59.99850 * 19 16 15 30 30 H 1.09002 * 109.47075 * 299.99543 * 20 12 11 31 31 H 1.08996 * 109.47407 * 60.00500 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0011 13 1 0.3060 -4.8100 0.5908 14 6 0.8522 -5.2955 -1.4357 15 6 0.0866 -6.6202 -1.4351 16 6 0.9635 -7.7158 -0.8253 17 1 1.8741 -7.8225 -1.4149 18 8 0.2488 -8.9532 -0.8252 19 6 1.3279 -7.3366 0.6115 20 6 2.0940 -6.0116 0.6107 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6477 0.0009 23 1 0.2271 -4.5153 -1.8700 24 1 1.7626 -5.4019 -2.0254 25 1 -0.1726 -6.8906 -2.4587 26 1 -0.8239 -6.5134 -0.8454 27 1 -0.0146 -9.2553 -1.7052 28 1 1.9530 -8.1169 1.0458 29 1 0.4174 -7.2298 1.2011 30 1 3.0044 -6.1180 0.0209 31 1 2.3535 -5.7415 1.6343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000240743997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:27 Heat of formation + Delta-G solvation = -114.389486 kcal Electronic energy + Delta-G solvation = -14396.318144 eV Core-core repulsion = 11869.493162 eV Total energy + Delta-G solvation = -2526.824983 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.01984 -37.09594 -35.23151 -32.61938 -31.84472 -30.56503 -28.04827 -25.81289 -22.50343 -21.89663 -19.76736 -19.43926 -17.27636 -17.02603 -15.51249 -15.31458 -14.43714 -14.36058 -13.96885 -13.65482 -12.88943 -12.46210 -12.29483 -12.00668 -11.89204 -11.61096 -11.22723 -11.01649 -10.86693 -10.81694 -10.45506 -10.22668 -10.13701 -10.02591 -9.58641 -8.85111 -7.58906 -7.47154 -6.17283 -4.62810 3.13288 3.21496 3.25901 4.09965 4.22444 4.59649 4.80679 4.89114 5.01130 5.35123 5.41723 5.51048 5.62568 5.69570 5.79180 5.94863 6.01161 6.14468 6.19509 6.31231 6.37525 6.47721 6.78174 6.87483 7.44590 7.65685 7.96083 8.14603 8.35675 9.03969 9.57023 10.61822 10.80987 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076589 B = 0.006468 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.499822 B = 4328.127794 C = 4485.214002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.764 5.764 12 C 0.154 3.846 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.147 4.147 16 C 0.104 3.896 17 H 0.052 0.948 18 O -0.573 6.573 19 C -0.107 4.107 20 C -0.122 4.122 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.374 0.626 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -11.260 -2.109 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.417 5.417 12 C 0.048 3.952 13 H 0.094 0.906 14 C -0.164 4.164 15 C -0.185 4.185 16 C 0.046 3.954 17 H 0.070 0.930 18 O -0.378 6.378 19 C -0.145 4.145 20 C -0.160 4.160 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.221 0.779 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.283 -11.076 -1.448 11.642 hybrid contribution 0.834 0.812 -0.710 1.363 sum 4.117 -10.264 -2.158 11.267 Atomic orbital electron populations 1.70034 1.07046 1.27093 1.35590 1.25708 0.94597 1.00272 0.92626 0.86336 0.80491 0.81843 0.78189 1.18808 1.20197 1.20184 1.20939 0.93595 0.89488 1.54311 0.91457 1.18226 0.87239 0.82506 0.76178 1.90594 1.14067 1.86830 1.54799 1.46189 1.08401 1.04777 1.82376 1.20505 0.95848 0.84245 0.94629 0.90641 1.21903 0.99846 0.95926 0.98743 1.22226 0.99887 0.95864 1.00567 1.21892 0.93318 0.82902 0.97313 0.92967 1.86490 1.77542 1.39651 1.34113 1.21418 1.01018 0.96871 0.95170 1.21783 0.98591 0.93918 1.01731 0.92211 0.78988 0.90888 0.92614 0.92252 0.91081 0.77922 0.91532 0.91096 0.91887 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.19 11.83 55.55 0.66 -22.53 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 3 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.55 -15.47 9.54 -35.63 -0.34 -15.81 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.76 7.71 -12.98 -0.10 15.66 16 10 O -0.58 -18.74 14.68 5.20 0.08 -18.66 16 11 N -0.76 -16.97 5.07 -55.21 -0.28 -17.25 16 12 C 0.15 2.94 2.45 -67.93 -0.17 2.77 16 13 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 14 C -0.12 -2.19 5.49 -26.73 -0.15 -2.33 16 15 C -0.15 -2.10 5.55 -26.73 -0.15 -2.25 16 16 C 0.10 1.34 3.47 -26.73 -0.09 1.25 16 17 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 18 O -0.57 -7.08 13.32 -35.23 -0.47 -7.55 16 19 C -0.11 -1.44 5.58 -26.70 -0.15 -1.59 16 20 C -0.12 -1.78 5.40 -26.70 -0.14 -1.93 16 21 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 22 H 0.38 7.40 8.58 -40.82 -0.35 7.05 16 23 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.37 3.01 9.08 45.56 0.41 3.42 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 261.12 15.07 3.94 3.94 Total: -1.00 -34.32 261.12 -6.17 -40.49 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.68 Total: 8.27 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.38 Total: -1.88 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.38 Total: -39.78 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.39 Total: -26.22 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.32 -6.17 -40.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000240743997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.899 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds