Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86803 * 119.99808 * 2 1 4 4 H 1.48499 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47229 * 299.99921 * 3 2 1 6 6 H 1.48496 * 109.47023 * 60.00044 * 3 2 1 7 7 C 1.40049 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99715 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00136 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99822 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46963 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47067 * 300.00341 * 16 15 14 18 18 O 1.42900 * 109.47442 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47092 * 60.00194 * 16 15 14 20 20 C 1.53002 * 109.46799 * 205.00309 * 12 11 9 21 21 H 0.96998 * 120.00178 * 0.02562 * 1 2 3 22 22 H 0.97002 * 119.99716 * 0.02562 * 11 9 7 23 23 H 1.09001 * 109.47194 * 299.99493 * 14 12 11 24 24 H 1.08992 * 109.47399 * 59.99666 * 14 12 11 25 25 H 1.09000 * 109.47437 * 180.02562 * 15 14 12 26 26 H 1.09002 * 109.47508 * 59.99571 * 15 14 12 27 27 H 0.96697 * 113.99983 * 59.99480 * 18 16 15 28 28 H 1.09001 * 109.47375 * 180.02562 * 19 16 15 29 29 H 1.09002 * 109.47497 * 59.99850 * 19 16 15 30 30 H 1.09002 * 109.47075 * 299.99543 * 20 12 11 31 31 H 1.08996 * 109.47407 * 60.00500 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0011 13 1 0.3060 -4.8100 0.5908 14 6 0.8522 -5.2955 -1.4357 15 6 0.0866 -6.6202 -1.4351 16 6 0.9635 -7.7158 -0.8253 17 1 1.8741 -7.8225 -1.4149 18 8 0.2488 -8.9532 -0.8252 19 6 1.3279 -7.3366 0.6115 20 6 2.0940 -6.0116 0.6107 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6477 0.0009 23 1 0.2271 -4.5153 -1.8700 24 1 1.7626 -5.4019 -2.0254 25 1 -0.1726 -6.8906 -2.4587 26 1 -0.8239 -6.5134 -0.8454 27 1 -0.0146 -9.2553 -1.7052 28 1 1.9530 -8.1169 1.0458 29 1 0.4174 -7.2298 1.2011 30 1 3.0044 -6.1180 0.0209 31 1 2.3535 -5.7415 1.6343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000240743997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = -142.384766 kcal Electronic energy + Delta-G solvation = -14397.532111 eV Core-core repulsion = 11869.493162 eV Total energy + Delta-G solvation = -2528.038949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42405 -38.84366 -36.65366 -34.66688 -33.69287 -31.79904 -29.68085 -27.75527 -23.75214 -23.36589 -21.43485 -21.02150 -19.13332 -18.13749 -17.45127 -16.92446 -16.08110 -15.71511 -15.42989 -15.10336 -14.44841 -14.29994 -14.00599 -13.29791 -13.18480 -13.15120 -12.86900 -12.70261 -12.57356 -12.23886 -12.10820 -11.96832 -11.59823 -11.18155 -10.94456 -10.73160 -9.82951 -9.42545 -8.28655 -6.85295 1.39997 1.40216 1.58270 2.24662 2.48124 3.02906 3.40095 3.60662 3.70987 3.85261 4.16122 4.23181 4.29865 4.39576 4.48595 4.51607 4.77845 4.97108 5.03611 5.06576 5.15991 5.17384 5.32285 5.37683 5.44571 5.90132 6.26910 6.33348 6.87349 6.92086 7.59373 8.51680 8.69074 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076589 B = 0.006468 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.499822 B = 4328.127794 C = 4485.214002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.751 5.751 12 C 0.149 3.851 13 H 0.032 0.968 14 C -0.118 4.118 15 C -0.141 4.141 16 C 0.113 3.887 17 H 0.077 0.923 18 O -0.582 6.582 19 C -0.107 4.107 20 C -0.108 4.108 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.394 0.606 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.704 -12.012 -2.560 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.611 4.611 8 H 0.106 0.894 9 C 0.342 3.658 10 O -0.520 6.520 11 N -0.404 5.404 12 C 0.043 3.957 13 H 0.050 0.950 14 C -0.157 4.157 15 C -0.179 4.179 16 C 0.054 3.946 17 H 0.095 0.905 18 O -0.391 6.391 19 C -0.145 4.145 20 C -0.146 4.146 21 H 0.083 0.917 22 H 0.229 0.771 23 H 0.044 0.956 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.244 0.756 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.760 -11.893 -1.913 13.352 hybrid contribution 0.037 0.961 -0.579 1.122 sum 5.797 -10.932 -2.492 12.622 Atomic orbital electron populations 1.70207 1.09608 1.28810 1.36820 1.26999 0.95502 1.05049 0.91195 0.84957 0.79386 0.75360 0.78472 1.16864 1.19396 1.19432 1.21495 0.94762 0.90179 1.54667 0.89393 1.18621 0.86857 0.84488 0.75880 1.90550 1.16300 1.87981 1.57133 1.45868 1.09167 1.04585 1.80826 1.20693 0.95035 0.84324 0.95606 0.94953 1.21770 1.00272 0.96309 0.97355 1.22183 0.98954 0.94795 1.01963 1.21767 0.93669 0.82381 0.96771 0.90531 1.86454 1.77599 1.38890 1.36138 1.21418 1.00566 0.96617 0.95882 1.21667 0.98581 0.92570 1.01778 0.91661 0.77126 0.95616 0.90448 0.89859 0.93281 0.75601 0.89194 0.92828 0.89182 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.38 11.83 21.84 0.26 -51.12 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 4 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.57 -32.88 9.54 24.83 0.24 -32.64 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.54 31.62 7.71 86.36 0.67 32.29 16 10 O -0.63 -43.22 14.68 -4.31 -0.06 -43.28 16 11 N -0.75 -33.83 5.07 -446.81 -2.27 -36.10 16 12 C 0.15 5.78 2.45 44.99 0.11 5.89 16 13 H 0.03 1.53 7.58 -2.39 -0.02 1.51 16 14 C -0.12 -4.15 5.49 30.59 0.17 -3.99 16 15 C -0.14 -3.89 5.55 30.60 0.17 -3.72 16 16 C 0.11 2.58 3.47 30.59 0.11 2.68 16 17 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 18 O -0.58 -12.64 13.32 -148.98 -1.98 -14.62 16 19 C -0.11 -2.64 5.58 30.61 0.17 -2.47 16 20 C -0.11 -2.95 5.40 30.61 0.17 -2.79 16 21 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 22 H 0.39 15.08 8.58 -92.71 -0.80 14.28 16 23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.39 5.01 9.08 -74.06 -0.67 4.33 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -78.27 261.12 -0.10 -78.37 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.33 Total: 26.18 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 2.26 Total: -2.74 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.01 Total: -87.22 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -2.05 Total: -57.90 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -78.27 -0.10 -78.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000240743997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.013 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds