Wall clock time and date at job start Sun Mar 29 2020 21:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46850 * 110.99906 * 2 1 4 4 C 1.53039 * 109.52453 * 185.84027 * 3 2 1 5 5 C 1.53120 * 109.27693 * 300.82477 * 4 3 2 6 6 C 1.53123 * 109.16289 * 57.65064 * 5 4 3 7 7 H 1.08997 * 109.50225 * 62.32919 * 6 5 4 8 8 N 1.46901 * 109.50288 * 182.40623 * 6 5 4 9 9 C 1.46896 * 110.99827 * 205.00482 * 8 6 5 10 10 C 1.52998 * 109.47026 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 C 1.46841 * 110.99966 * 124.21151 * 2 1 3 20 20 H 1.08998 * 109.47347 * 63.95147 * 1 2 3 21 21 H 1.08998 * 109.47179 * 183.95429 * 1 2 3 22 22 H 1.08995 * 109.47070 * 303.95119 * 1 2 3 23 23 H 1.09005 * 109.46021 * 65.82299 * 3 2 1 24 24 H 1.09005 * 109.45369 * 305.85390 * 3 2 1 25 25 H 1.08992 * 109.50227 * 180.88341 * 4 3 2 26 26 H 1.09003 * 109.53318 * 60.77766 * 4 3 2 27 27 H 1.09003 * 109.52053 * 297.75126 * 5 4 3 28 28 H 1.08999 * 109.57434 * 177.58956 * 5 4 3 29 29 H 1.00899 * 111.00212 * 81.04760 * 8 6 5 30 30 H 1.09000 * 109.47613 * 59.99983 * 9 8 6 31 31 H 1.09002 * 109.46818 * 299.99488 * 9 8 6 32 32 H 1.09001 * 109.47671 * 59.99839 * 10 9 8 33 33 H 1.08998 * 109.47454 * 299.99836 * 10 9 8 34 34 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.46686 * 54.14671 * 19 2 1 36 36 H 1.08997 * 109.46488 * 294.17640 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8715 1.0208 7 1 3.7819 -1.3838 0.0956 8 7 4.0461 -1.6246 2.1662 9 6 3.9996 -3.0706 1.9120 10 6 4.5557 -3.8198 3.1246 11 6 4.5074 -5.3034 2.8641 12 1 4.1185 -5.6747 1.9274 13 6 4.9644 -6.1863 3.8193 14 7 5.4430 -5.7338 4.9576 15 14 4.9052 -8.0252 3.4961 16 1 6.1712 -8.4552 2.8500 17 1 4.7350 -8.7485 4.7817 18 1 3.7623 -8.3336 2.5995 19 6 1.9952 -0.7708 1.1337 20 1 -0.3634 0.4513 -0.9232 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5739 0.8524 23 1 1.7324 1.8608 0.9376 24 1 1.5633 1.9256 -0.8331 25 1 3.9098 2.3513 -0.1310 26 1 3.7819 0.8572 -1.0907 27 1 3.8886 1.0354 1.9560 28 1 5.1999 0.4714 0.8916 29 1 3.5499 -1.3901 3.0129 30 1 4.6003 -3.3046 1.0330 31 1 2.9676 -3.3760 1.7387 32 1 3.9547 -3.5859 4.0033 33 1 5.5875 -3.5145 3.2984 34 1 5.7649 -6.3550 5.6296 35 1 1.5634 -1.7716 1.1242 36 1 1.7324 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258998580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:18 Heat of formation + Delta-G solvation = -13.877847 kcal Electronic energy + Delta-G solvation = -14267.020796 eV Core-core repulsion = 11978.106082 eV Total energy + Delta-G solvation = -2288.914714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15322 -35.66350 -33.36335 -32.52727 -30.28305 -27.61360 -26.72665 -24.09676 -22.81792 -21.76127 -20.67175 -19.54987 -16.35666 -15.91995 -15.42464 -14.77968 -14.46408 -14.38222 -13.90096 -13.82877 -13.21261 -12.74973 -12.48781 -12.27133 -12.02812 -11.82456 -11.27469 -11.07251 -10.90642 -10.79917 -10.59557 -10.49018 -10.34131 -9.97289 -9.31086 -9.11524 -8.39722 -8.33237 -7.78057 -5.97758 -4.00220 3.33838 3.39728 3.43089 3.86202 4.45450 4.67965 4.91307 4.96138 5.10473 5.16001 5.33431 5.36110 5.38244 5.46893 5.57079 5.73839 5.75403 5.82266 5.87817 5.98345 6.09281 6.33631 6.37622 6.46023 6.52547 6.97286 7.00604 7.02320 7.54292 7.75502 7.85922 7.98833 8.10972 8.46117 9.07170 9.63539 11.13732 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052815 B = 0.005500 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.026969 B = 5090.105342 C = 5388.891178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.090 3.910 7 H 0.082 0.918 8 N -0.684 5.684 9 C 0.066 3.934 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.028 3.972 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.022 0.978 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.334 0.666 30 H 0.059 0.941 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 13.463 -8.667 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.021 4.021 7 H 0.100 0.900 8 N -0.313 5.313 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.102 4.102 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.464 13.219 -9.118 17.311 hybrid contribution -1.349 -0.858 0.796 1.786 sum -7.813 12.361 -8.322 16.825 Atomic orbital electron populations 1.22355 0.87615 1.01938 1.00443 1.61912 1.07311 1.13663 1.43667 1.22112 0.96045 0.89079 1.00031 1.21587 0.94040 1.00067 0.99796 1.21572 1.00725 0.94766 0.97622 1.21596 0.90023 0.94748 0.95763 0.90008 1.60758 1.58716 1.07919 1.03922 1.22191 0.98041 0.84564 1.01405 1.19077 0.96943 0.93747 0.91531 1.21186 1.41417 0.91502 1.01867 0.92753 1.25000 0.95307 0.98907 0.95141 1.69976 1.42053 1.34562 1.06740 0.86588 0.78422 0.85423 0.77531 1.20613 1.21243 1.19926 1.22955 0.97925 0.98135 0.91159 0.91515 0.91401 0.95898 0.95145 0.91096 0.91564 0.91126 0.92494 0.91035 0.84822 0.92279 0.96645 0.96910 0.95645 0.93016 0.90756 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.62 60.06 0.58 0.84 16 2 N -0.54 -6.82 4.91 -242.96 -1.19 -8.01 16 3 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 4 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 5 C -0.11 -1.42 5.61 -26.61 -0.15 -1.57 16 6 C 0.09 1.37 2.63 -67.63 -0.18 1.19 16 7 H 0.08 1.35 7.80 -51.93 -0.41 0.94 16 8 N -0.68 -12.44 6.25 -106.64 -0.67 -13.11 16 9 C 0.07 1.42 5.42 -3.83 -0.02 1.40 16 10 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.03 0.39 4.72 -3.84 -0.02 0.38 16 20 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.33 5.91 8.46 -39.29 -0.33 5.57 16 30 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 31 H 0.02 0.33 7.47 -51.93 -0.39 -0.06 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 36 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -30.05 287.42 -8.87 -38.93 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.53 Total: -0.67 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.53 Total: -11.84 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -1.12 Total: -47.62 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.05 -8.87 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258998580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.050 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds