Wall clock time and date at job start Sun Mar 29 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46850 * 110.99906 * 2 1 4 4 C 1.53039 * 109.52453 * 185.84027 * 3 2 1 5 5 C 1.53120 * 109.27693 * 300.82477 * 4 3 2 6 6 C 1.53123 * 109.16289 * 57.65064 * 5 4 3 7 7 H 1.08997 * 109.50225 * 62.32919 * 6 5 4 8 8 N 1.46901 * 109.50288 * 182.40623 * 6 5 4 9 9 C 1.46896 * 110.99827 * 205.00482 * 8 6 5 10 10 C 1.52998 * 109.47026 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 C 1.46841 * 110.99966 * 124.21151 * 2 1 3 20 20 H 1.08998 * 109.47347 * 63.95147 * 1 2 3 21 21 H 1.08998 * 109.47179 * 183.95429 * 1 2 3 22 22 H 1.08995 * 109.47070 * 303.95119 * 1 2 3 23 23 H 1.09005 * 109.46021 * 65.82299 * 3 2 1 24 24 H 1.09005 * 109.45369 * 305.85390 * 3 2 1 25 25 H 1.08992 * 109.50227 * 180.88341 * 4 3 2 26 26 H 1.09003 * 109.53318 * 60.77766 * 4 3 2 27 27 H 1.09003 * 109.52053 * 297.75126 * 5 4 3 28 28 H 1.08999 * 109.57434 * 177.58956 * 5 4 3 29 29 H 1.00899 * 111.00212 * 81.04760 * 8 6 5 30 30 H 1.09000 * 109.47613 * 59.99983 * 9 8 6 31 31 H 1.09002 * 109.46818 * 299.99488 * 9 8 6 32 32 H 1.09001 * 109.47671 * 59.99839 * 10 9 8 33 33 H 1.08998 * 109.47454 * 299.99836 * 10 9 8 34 34 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.46686 * 54.14671 * 19 2 1 36 36 H 1.08997 * 109.46488 * 294.17640 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8715 1.0208 7 1 3.7819 -1.3838 0.0956 8 7 4.0461 -1.6246 2.1662 9 6 3.9996 -3.0706 1.9120 10 6 4.5557 -3.8198 3.1246 11 6 4.5074 -5.3034 2.8641 12 1 4.1185 -5.6747 1.9274 13 6 4.9644 -6.1863 3.8193 14 7 5.4430 -5.7338 4.9576 15 14 4.9052 -8.0252 3.4961 16 1 6.1712 -8.4552 2.8500 17 1 4.7350 -8.7485 4.7817 18 1 3.7623 -8.3336 2.5995 19 6 1.9952 -0.7708 1.1337 20 1 -0.3634 0.4513 -0.9232 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5739 0.8524 23 1 1.7324 1.8608 0.9376 24 1 1.5633 1.9256 -0.8331 25 1 3.9098 2.3513 -0.1310 26 1 3.7819 0.8572 -1.0907 27 1 3.8886 1.0354 1.9560 28 1 5.1999 0.4714 0.8916 29 1 3.5499 -1.3901 3.0129 30 1 4.6003 -3.3046 1.0330 31 1 2.9676 -3.3760 1.7387 32 1 3.9547 -3.5859 4.0033 33 1 5.5875 -3.5145 3.2984 34 1 5.7649 -6.3550 5.6296 35 1 1.5634 -1.7716 1.1242 36 1 1.7324 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258998580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:17 Heat of formation + Delta-G solvation = -35.144220 kcal Electronic energy + Delta-G solvation = -14267.942975 eV Core-core repulsion = 11978.106082 eV Total energy + Delta-G solvation = -2289.836893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23827 -37.14061 -35.15922 -33.87437 -31.91047 -29.21746 -27.65747 -26.00424 -23.85907 -22.95320 -22.48683 -20.69845 -18.52228 -17.12587 -16.56663 -16.46335 -15.87103 -15.61993 -15.21552 -15.05795 -14.62660 -14.23881 -13.91241 -13.48885 -13.30417 -13.13208 -12.85967 -12.72283 -12.48298 -12.26191 -12.04559 -11.79013 -11.65164 -11.45725 -11.36584 -11.06108 -10.56949 -9.36399 -9.27076 -8.20680 -6.32365 1.40361 1.42185 1.53145 2.40448 2.88946 3.12757 3.38560 3.85763 3.88419 4.12507 4.15752 4.34028 4.44352 4.48467 4.54241 4.59510 4.62829 4.77951 4.81147 4.92920 4.95832 4.96990 5.05733 5.14025 5.35067 5.38437 5.45788 5.66959 5.77098 5.96678 6.10936 6.17231 6.30688 6.52496 6.84639 7.37033 8.91568 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052815 B = 0.005500 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.026969 B = 5090.105342 C = 5388.891178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.054 3.946 4 C -0.110 4.110 5 C -0.104 4.104 6 C 0.091 3.909 7 H 0.069 0.931 8 N -0.688 5.688 9 C 0.086 3.914 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.037 3.963 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.028 0.972 23 H 0.033 0.967 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.337 0.663 30 H 0.055 0.945 31 H 0.018 0.982 32 H -0.009 1.009 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.058 0.942 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 13.861 -9.889 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.020 4.020 7 H 0.087 0.913 8 N -0.318 5.318 9 C -0.042 4.042 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.093 4.093 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.010 0.990 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.282 13.642 -10.358 18.612 hybrid contribution -1.099 -0.917 1.179 1.854 sum -8.380 12.725 -9.180 17.789 Atomic orbital electron populations 1.22407 0.86314 1.02014 1.01625 1.61922 1.08607 1.14666 1.42610 1.22207 0.95918 0.88217 1.01033 1.21571 0.94111 1.00861 0.98320 1.21535 1.00318 0.93479 0.98933 1.21631 0.91180 0.95439 0.93713 0.91255 1.60691 1.59677 1.06135 1.05295 1.21782 0.97545 0.86243 0.98676 1.18927 0.94917 0.93888 0.92850 1.21610 1.41702 0.92813 1.02272 0.92240 1.25973 0.94576 1.04387 0.94723 1.70109 1.42749 1.36566 1.07767 0.85412 0.78950 0.78730 0.77737 1.19702 1.20595 1.18755 1.22731 0.96776 0.97790 0.92029 0.89697 0.91886 0.95356 0.94881 0.89046 0.89181 0.91450 0.92286 0.91708 0.84522 0.92623 0.96394 0.99033 0.98712 0.92708 0.92346 0.94965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.62 127.69 1.23 1.69 16 2 N -0.55 -12.93 4.91 -922.60 -4.53 -17.46 16 3 C 0.05 1.02 5.46 86.33 0.47 1.50 16 4 C -0.11 -2.13 6.09 30.65 0.19 -1.95 16 5 C -0.10 -2.59 5.61 30.68 0.17 -2.42 16 6 C 0.09 2.73 2.63 44.97 0.12 2.84 16 7 H 0.07 2.26 7.80 -2.39 -0.02 2.25 16 8 N -0.69 -25.33 6.25 -491.30 -3.07 -28.40 16 9 C 0.09 3.78 5.42 86.30 0.47 4.24 16 10 C 0.03 1.73 5.23 29.85 0.16 1.89 16 11 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 13 C 0.00 0.08 5.46 84.65 0.46 0.54 16 14 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 15 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.04 1.01 4.72 86.33 0.41 1.42 16 20 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 22 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.09 1.41 8.12 -2.38 -0.02 1.39 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.34 12.08 8.46 -89.69 -0.76 11.32 16 30 H 0.06 2.45 8.06 -2.39 -0.02 2.44 16 31 H 0.02 0.77 7.47 -2.39 -0.02 0.75 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.52 16 33 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.06 1.77 7.38 -2.39 -0.02 1.75 16 36 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 Total: -1.00 -64.33 287.42 -1.12 -65.45 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.26 Total: 12.76 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 3.90 Total: -21.83 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -7.32 Total: -103.23 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.33 -1.12 -65.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258998580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.311 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds