Wall clock time and date at job start Sun Mar 29 2020 21:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 N 1.46901 * 109.46918 * 119.99704 * 2 1 3 5 5 C 1.47844 * 111.00104 * 54.16139 * 4 2 1 6 6 C 1.54902 * 104.79834 * 146.36158 * 5 4 2 7 7 C 1.55136 * 101.65344 * 322.92800 * 6 5 4 8 8 H 1.08990 * 110.70816 * 277.27169 * 7 6 5 9 9 N 1.46507 * 110.70727 * 154.03353 * 7 6 5 10 10 C 1.46495 * 119.99978 * 306.40679 * 9 7 6 11 11 C 1.36937 * 120.00046 * 126.39972 * 9 7 6 12 12 H 1.07999 * 119.99825 * 20.40393 * 11 9 7 13 13 C 1.38805 * 120.00233 * 200.40680 * 11 9 7 14 14 N 1.31620 * 119.99957 * 14.99895 * 13 11 9 15 15 Si 1.86797 * 120.00211 * 195.00067 * 13 11 9 16 16 H 1.48502 * 109.46998 * 85.00174 * 15 13 11 17 17 H 1.48497 * 109.47305 * 205.00333 * 15 13 11 18 18 H 1.48501 * 109.46907 * 325.00176 * 15 13 11 19 19 C 1.47444 * 110.99794 * 175.00086 * 4 2 1 20 20 H 1.08997 * 109.47052 * 300.00310 * 1 2 3 21 21 H 1.09001 * 109.47073 * 60.00407 * 1 2 3 22 22 H 1.08996 * 109.46662 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47052 * 239.99690 * 2 1 3 24 24 H 1.08996 * 109.46991 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46797 * 299.99762 * 3 2 1 26 26 H 1.09000 * 109.46869 * 59.99365 * 3 2 1 27 27 H 1.09001 * 110.37016 * 265.19048 * 5 4 2 28 28 H 1.08998 * 110.37659 * 27.41982 * 5 4 2 29 29 H 1.09006 * 110.99147 * 81.02104 * 6 5 4 30 30 H 1.08995 * 110.99206 * 204.79371 * 6 5 4 31 31 H 1.08999 * 109.47427 * 95.13613 * 10 9 7 32 32 H 1.09004 * 109.47141 * 215.13947 * 10 9 7 33 33 H 1.09008 * 109.47047 * 335.13513 * 10 9 7 34 34 H 0.96999 * 120.00314 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.89248 * 356.15175 * 19 4 2 36 36 H 1.08997 * 109.89036 * 117.34016 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4343 -2.0459 1.3060 6 6 2.5464 -2.9081 1.9536 7 6 3.8223 -2.3187 1.2968 8 1 3.9873 -2.7577 0.3129 9 7 4.9896 -2.5217 2.1585 10 6 4.9581 -2.0722 3.5524 11 6 6.1101 -3.1318 1.6610 12 1 6.2772 -3.1673 0.5946 13 6 7.0311 -3.7045 2.5273 14 7 6.7035 -3.9280 3.7823 15 14 8.7355 -4.1581 1.9120 16 1 9.6209 -2.9681 1.9847 17 1 9.2945 -5.2434 2.7574 18 1 8.6461 -4.6232 0.5045 19 6 3.4886 -0.8169 1.1751 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.5495 -2.0276 1.9422 28 1 1.1821 -2.4292 0.3173 29 1 2.5657 -2.7725 3.0350 30 1 2.4245 -3.9602 1.6963 31 1 4.6669 -2.9027 4.1955 32 1 5.9472 -1.7176 3.8423 33 1 4.2366 -1.2617 3.6566 34 1 7.3469 -4.3286 4.3876 35 1 3.8784 -0.4253 0.2356 36 1 3.9209 -0.2719 2.0142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259428604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:21 Heat of formation + Delta-G solvation = 6.756081 kcal Electronic energy + Delta-G solvation = -14928.522466 eV Core-core repulsion = 12640.502507 eV Total energy + Delta-G solvation = -2288.019960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37878 -37.29062 -34.78510 -32.65871 -30.20463 -29.17867 -28.06842 -27.47849 -24.58571 -22.85994 -21.01544 -20.54596 -18.88447 -17.42146 -17.04511 -16.24346 -15.58691 -15.12308 -14.92040 -14.39183 -14.24430 -13.86066 -13.61312 -13.15724 -13.00752 -12.89351 -12.82140 -12.46545 -12.37193 -12.15655 -12.06385 -12.02019 -11.85246 -11.72767 -11.65108 -11.42907 -10.63883 -9.23518 -8.76518 -7.83714 -5.30300 1.45422 1.47597 1.55555 2.49252 3.04518 3.27735 3.60261 3.93315 4.03867 4.12244 4.23875 4.31305 4.43032 4.49924 4.55935 4.71557 4.83807 4.86876 4.94778 5.00341 5.01701 5.06352 5.15561 5.22856 5.29669 5.39337 5.43393 5.45620 5.61474 5.70154 6.07198 6.30340 6.31606 7.13245 7.85882 8.30512 9.19502 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054061 B = 0.007403 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.810656 B = 3781.285800 C = 3954.714408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 C -0.139 4.139 4 N -0.530 5.530 5 C 0.057 3.943 6 C -0.141 4.141 7 C 0.153 3.847 8 H 0.059 0.941 9 N -0.605 5.605 10 C 0.185 3.815 11 C -0.268 4.268 12 H 0.070 0.930 13 C -0.053 4.053 14 N -0.939 5.939 15 Si 0.971 3.029 16 H -0.285 1.285 17 H -0.294 1.294 18 H -0.269 1.269 19 C 0.041 3.959 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.002 0.998 32 H 0.014 0.986 33 H 0.028 0.972 34 H 0.248 0.752 35 H 0.050 0.950 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 7.260 -7.428 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.044 4.044 3 C -0.197 4.197 4 N -0.256 5.256 5 C -0.071 4.071 6 C -0.181 4.181 7 C 0.044 3.956 8 H 0.077 0.923 9 N -0.327 5.327 10 C 0.040 3.960 11 C -0.398 4.398 12 H 0.088 0.912 13 C -0.248 4.248 14 N -0.585 5.585 15 Si 0.799 3.201 16 H -0.212 1.212 17 H -0.221 1.221 18 H -0.194 1.194 19 C -0.089 4.089 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.021 0.979 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.248 7.502 -6.890 15.174 hybrid contribution 1.473 -0.988 -0.525 1.850 sum -9.774 6.515 -7.415 13.891 Atomic orbital electron populations 1.21840 0.92778 1.02316 1.02708 1.21931 0.96822 0.95459 0.90154 1.21820 1.00416 0.94903 1.02536 1.63701 1.05194 1.17883 1.38787 1.22893 0.97128 0.87406 0.99667 1.23097 0.95746 0.98993 1.00302 1.21714 0.86603 0.93847 0.93424 0.92286 1.44075 1.12142 1.67657 1.08846 1.20398 0.96772 0.94449 0.84377 1.19584 0.98380 1.29500 0.92341 0.91186 1.25748 1.03026 0.99558 0.96512 1.70261 1.34754 1.47848 1.05657 0.85232 0.80083 0.77127 0.77693 1.21183 1.22059 1.19397 1.23129 0.88113 0.97367 1.00308 0.92077 0.90649 0.92448 0.94804 0.93919 0.90508 0.92213 0.89484 0.92756 0.92515 0.91924 0.97932 0.96755 0.95338 0.94234 0.93128 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.97 71.98 0.65 -2.01 16 2 C 0.06 1.58 2.24 44.92 0.10 1.68 16 3 C -0.14 -3.11 9.15 71.98 0.66 -2.45 16 4 N -0.53 -16.13 5.03 -860.37 -4.33 -20.45 16 5 C 0.06 1.65 5.33 86.77 0.46 2.11 16 6 C -0.14 -5.26 6.61 31.98 0.21 -5.04 16 7 C 0.15 6.43 3.43 46.17 0.16 6.59 16 8 H 0.06 2.52 7.94 -2.39 -0.02 2.50 16 9 N -0.61 -31.37 2.93 -696.20 -2.04 -33.41 16 10 C 0.18 9.58 7.45 127.77 0.95 10.53 16 11 C -0.27 -15.11 9.63 84.03 0.81 -14.30 16 12 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 13 C -0.05 -3.06 5.06 84.86 0.43 -2.63 16 14 N -0.94 -56.82 10.67 21.65 0.23 -56.59 16 15 Si 0.97 45.81 29.58 68.60 2.03 47.84 16 16 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C 0.04 1.48 5.68 86.65 0.49 1.97 16 20 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.07 6.74 -2.39 -0.02 1.06 16 23 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 24 H 0.04 1.06 6.81 -2.39 -0.02 1.04 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.43 7.32 -2.39 -0.02 1.41 16 29 H 0.06 2.31 7.08 -2.38 -0.02 2.29 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.00 0.14 7.40 -2.39 -0.02 0.12 16 32 H 0.01 0.78 7.22 -2.38 -0.02 0.76 16 33 H 0.03 1.30 6.59 -2.38 -0.02 1.29 16 34 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.05 1.76 6.66 -2.39 -0.02 1.75 16 36 H 0.06 2.41 6.47 -2.39 -0.02 2.40 16 Total: -1.00 -62.55 276.42 1.84 -60.71 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.02 Total: 5.46 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.92 Total: -3.56 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -6.14 Total: -110.46 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -62.55 1.84 -60.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259428604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.469 kcal (2) G-P(sol) polarization free energy of solvation -62.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds