Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 C 1.53003 * 109.46624 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.52936 * 54.87173 * 13 12 10 15 15 C 1.53183 * 109.51847 * 174.99960 * 13 12 10 16 16 C 1.53183 * 109.03376 * 176.88593 * 15 13 12 17 17 C 1.53094 * 109.16054 * 303.01718 * 16 15 13 18 18 O 1.42898 * 109.41971 * 57.60992 * 17 16 15 19 19 C 1.42911 * 114.09568 * 298.84456 * 18 17 16 20 20 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 23 23 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 24 24 H 1.09002 * 109.54059 * 296.74582 * 15 13 12 25 25 H 1.08999 * 109.54395 * 57.01834 * 15 13 12 26 26 H 1.08990 * 109.52315 * 62.92148 * 16 15 13 27 27 H 1.08999 * 109.52272 * 183.04810 * 16 15 13 28 28 H 1.08998 * 109.48171 * 177.59714 * 17 16 15 29 29 H 1.09006 * 109.47983 * 297.61500 * 17 16 15 30 30 H 1.08994 * 109.47830 * 301.16902 * 19 18 17 31 31 H 1.09000 * 109.48005 * 181.13866 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 6 6.0707 -3.8130 -0.0070 14 1 5.6311 -4.3553 -0.8440 15 6 7.5968 -3.8164 -0.1397 16 6 8.1020 -5.2603 -0.0595 17 6 7.6319 -5.8847 1.2569 18 8 6.2062 -5.8215 1.3303 19 6 5.6791 -4.4933 1.3073 20 1 -0.4850 0.8401 -0.0004 21 1 3.8649 -0.3632 -0.0014 22 1 5.9200 -1.8590 -0.9009 23 1 5.9281 -1.8543 0.8791 24 1 7.8803 -3.3838 -1.0992 25 1 8.0345 -3.2315 0.6692 26 1 7.7034 -5.8327 -0.8969 27 1 9.1913 -5.2678 -0.0987 28 1 7.9523 -6.9256 1.3003 29 1 8.0638 -5.3363 2.0941 30 1 6.0853 -3.9266 2.1451 31 1 4.5927 -4.5319 1.3870 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260158636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -99.594373 kcal Electronic energy + Delta-G solvation = -14381.183954 eV Core-core repulsion = 11855.000535 eV Total energy + Delta-G solvation = -2526.183418 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.49044 -38.05710 -34.38770 -33.76537 -31.82300 -31.62671 -27.60263 -24.83521 -24.51405 -22.26398 -19.93227 -19.29701 -18.20078 -16.10659 -16.00733 -15.61041 -14.96612 -14.78963 -14.29982 -13.74873 -13.67121 -13.09395 -12.57206 -12.43238 -12.15533 -12.01415 -11.52377 -11.17907 -11.09122 -10.69888 -10.61188 -10.55784 -10.08882 -9.97434 -9.55098 -9.22827 -8.47084 -8.18608 -6.32129 -3.83425 3.01887 3.06137 3.14374 3.73007 4.09085 4.11936 4.55130 4.86344 4.92609 5.08435 5.09880 5.26026 5.33059 5.48802 5.60310 5.73340 5.80842 5.82170 5.91970 5.94723 6.08837 6.11849 6.23879 6.61212 6.63819 7.45541 7.56339 8.14600 8.58098 8.93989 9.42028 9.81856 10.80971 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062959 B = 0.006823 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.630369 B = 4102.558408 C = 4382.375956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.447 3.553 11 O -0.574 6.574 12 C -0.129 4.129 13 C -0.101 4.101 14 H 0.087 0.913 15 C -0.119 4.119 16 C -0.154 4.154 17 C 0.057 3.943 18 O -0.382 6.382 19 C 0.062 3.938 20 H 0.273 0.727 21 H 0.371 0.629 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.550 -3.217 0.973 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.227 5.227 10 C 0.233 3.767 11 O -0.458 6.458 12 C -0.170 4.170 13 C -0.120 4.120 14 H 0.105 0.895 15 C -0.157 4.157 16 C -0.192 4.192 17 C -0.020 4.020 18 O -0.300 6.300 19 C -0.014 4.014 20 H 0.084 0.916 21 H 0.204 0.796 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.804 -3.955 0.989 16.321 hybrid contribution 0.792 1.814 -0.076 1.981 sum 16.596 -2.141 0.913 16.759 Atomic orbital electron populations 1.69624 1.05661 1.27513 1.49251 1.25054 0.95495 0.97999 0.97600 0.86674 0.79797 0.84046 0.78901 1.19617 1.20156 1.19479 1.19471 0.79382 0.96655 1.48068 0.86228 1.42276 1.07557 1.06316 1.66582 1.19877 0.88610 0.84409 0.83778 1.90533 1.69881 1.30832 1.54528 1.21556 0.94935 0.97522 1.02985 1.21452 0.94273 0.95631 1.00634 0.89491 1.21690 0.95703 0.96278 1.02013 1.22173 1.00585 0.97067 0.99394 1.22529 0.82667 1.00896 0.95902 1.87979 1.19528 1.28130 1.94395 1.22931 1.01516 0.82179 0.94741 0.91602 0.79636 0.90057 0.90391 0.91595 0.92035 0.91071 0.91354 0.89497 0.93708 0.94248 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.59 -14.03 5.09 -10.96 -0.06 -14.08 16 10 C 0.45 10.01 7.51 -10.98 -0.08 9.93 16 11 O -0.57 -15.06 13.57 5.55 0.08 -14.98 16 12 C -0.13 -2.09 5.18 -27.88 -0.14 -2.24 16 13 C -0.10 -1.57 2.03 -90.48 -0.18 -1.75 16 14 H 0.09 1.54 7.95 -51.93 -0.41 1.13 16 15 C -0.12 -1.41 5.31 -26.54 -0.14 -1.56 16 16 C -0.15 -1.69 6.14 -26.59 -0.16 -1.85 16 17 C 0.06 0.69 6.84 37.21 0.25 0.94 16 18 O -0.38 -6.27 10.77 -35.23 -0.38 -6.65 16 19 C 0.06 1.05 5.84 37.20 0.22 1.27 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 22 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.12 2.43 6.05 -51.93 -0.31 2.12 16 LS Contribution 255.10 15.07 3.84 3.84 Total: -1.00 -31.71 255.10 -5.27 -36.98 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.32 Total: 8.31 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.49 Total: -3.07 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.72 Total: -39.09 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.30 Total: -21.63 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.71 -5.27 -36.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260158636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.614 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds