Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 C 1.53003 * 109.46624 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.52936 * 54.87173 * 13 12 10 15 15 C 1.53183 * 109.51847 * 174.99960 * 13 12 10 16 16 C 1.53183 * 109.03376 * 176.88593 * 15 13 12 17 17 C 1.53094 * 109.16054 * 303.01718 * 16 15 13 18 18 O 1.42898 * 109.41971 * 57.60992 * 17 16 15 19 19 C 1.42911 * 114.09568 * 298.84456 * 18 17 16 20 20 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 21 21 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 23 23 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 24 24 H 1.09002 * 109.54059 * 296.74582 * 15 13 12 25 25 H 1.08999 * 109.54395 * 57.01834 * 15 13 12 26 26 H 1.08990 * 109.52315 * 62.92148 * 16 15 13 27 27 H 1.08999 * 109.52272 * 183.04810 * 16 15 13 28 28 H 1.08998 * 109.48171 * 177.59714 * 17 16 15 29 29 H 1.09006 * 109.47983 * 297.61500 * 17 16 15 30 30 H 1.08994 * 109.47830 * 301.16902 * 19 18 17 31 31 H 1.09000 * 109.48005 * 181.13866 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 6 6.0707 -3.8130 -0.0070 14 1 5.6311 -4.3553 -0.8440 15 6 7.5968 -3.8164 -0.1397 16 6 8.1020 -5.2603 -0.0595 17 6 7.6319 -5.8847 1.2569 18 8 6.2062 -5.8215 1.3303 19 6 5.6791 -4.4933 1.3073 20 1 -0.4850 0.8401 -0.0004 21 1 3.8649 -0.3632 -0.0014 22 1 5.9200 -1.8590 -0.9009 23 1 5.9281 -1.8543 0.8791 24 1 7.8803 -3.3838 -1.0992 25 1 8.0345 -3.2315 0.6692 26 1 7.7034 -5.8327 -0.8969 27 1 9.1913 -5.2678 -0.0987 28 1 7.9523 -6.9256 1.3003 29 1 8.0638 -5.3363 2.0941 30 1 6.0853 -3.9266 2.1451 31 1 4.5927 -4.5319 1.3870 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260158636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -123.655327 kcal Electronic energy + Delta-G solvation = -14382.227315 eV Core-core repulsion = 11855.000535 eV Total energy + Delta-G solvation = -2527.226780 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88161 -39.63924 -36.16068 -35.20844 -33.75659 -32.86450 -29.05225 -26.39934 -25.88004 -23.47766 -21.27372 -20.95835 -20.10338 -17.68206 -17.23617 -16.91974 -16.80833 -16.01542 -15.64015 -15.26287 -15.02583 -14.80510 -14.36659 -13.62826 -13.48381 -13.41114 -13.03100 -12.61570 -12.40711 -12.06188 -12.00057 -11.86829 -11.64658 -11.49131 -11.17233 -10.39087 -10.28229 -10.23616 -8.42100 -6.03123 1.29808 1.35387 1.44458 1.95825 2.22742 2.89972 3.06907 3.14749 3.84669 3.90796 3.93243 4.09470 4.19338 4.35250 4.47015 4.61552 4.71803 4.77271 4.81776 4.93945 5.02236 5.14626 5.17711 5.36618 5.48485 5.55062 5.95642 6.34816 6.57891 6.87685 7.39420 7.96911 8.75752 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062959 B = 0.006823 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.630369 B = 4102.558408 C = 4382.375956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.332 4.332 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.444 3.556 11 O -0.621 6.621 12 C -0.117 4.117 13 C -0.099 4.099 14 H 0.053 0.947 15 C -0.112 4.112 16 C -0.152 4.152 17 C 0.046 3.954 18 O -0.412 6.412 19 C 0.064 3.936 20 H 0.279 0.721 21 H 0.390 0.610 22 H 0.116 0.884 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.746 -1.115 1.068 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.153 1.153 7 C -0.461 4.461 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.233 3.767 11 O -0.507 6.507 12 C -0.157 4.157 13 C -0.119 4.119 14 H 0.072 0.928 15 C -0.149 4.149 16 C -0.190 4.190 17 C -0.030 4.030 18 O -0.331 6.331 19 C -0.012 4.012 20 H 0.089 0.911 21 H 0.226 0.774 22 H 0.134 0.866 23 H 0.131 0.869 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.034 -1.872 1.083 20.151 hybrid contribution -0.556 0.955 -0.091 1.109 sum 19.478 -0.916 0.992 19.525 Atomic orbital electron populations 1.69813 1.08220 1.29272 1.50297 1.26155 0.96482 1.02818 0.96002 0.85352 0.79536 0.76575 0.79982 1.18107 1.20028 1.15272 1.19043 0.81733 0.94905 1.50407 0.92817 1.42112 1.05758 1.07779 1.67555 1.21227 0.91510 0.83130 0.80833 1.90533 1.71850 1.32710 1.55598 1.21605 0.89074 0.98764 1.06228 1.21420 0.97375 0.94587 0.98492 0.92806 1.21676 0.91969 0.97341 1.03927 1.22179 1.02506 0.96221 0.98061 1.22864 0.80151 1.02577 0.97365 1.87928 1.22616 1.27893 1.94710 1.22713 0.99014 0.83078 0.96429 0.91143 0.77382 0.86588 0.86874 0.89753 0.89775 0.92353 0.87990 0.87896 0.91948 0.92240 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.96 21.66 0.30 -56.63 16 2 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 3 Si 0.97 38.77 27.74 68.60 1.90 40.68 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 7 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 8 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 9 N -0.59 -27.98 5.09 -306.97 -1.56 -29.54 16 10 C 0.44 20.00 7.51 87.65 0.66 20.66 16 11 O -0.62 -34.52 13.57 -3.06 -0.04 -34.56 16 12 C -0.12 -3.42 5.18 29.85 0.15 -3.27 16 13 C -0.10 -2.93 2.03 -10.70 -0.02 -2.95 16 14 H 0.05 1.93 7.95 -2.39 -0.02 1.91 16 15 C -0.11 -2.17 5.31 30.72 0.16 -2.00 16 16 C -0.15 -2.79 6.14 30.69 0.19 -2.60 16 17 C 0.05 1.00 6.84 72.01 0.49 1.49 16 18 O -0.41 -13.43 10.77 -148.98 -1.60 -15.03 16 19 C 0.06 2.14 5.84 72.01 0.42 2.57 16 20 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 21 H 0.39 15.15 5.76 -92.70 -0.53 14.62 16 22 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.11 2.62 8.14 -2.39 -0.02 2.61 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 3.06 6.05 -2.39 -0.01 3.05 16 Total: -1.00 -76.64 255.10 2.90 -73.73 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.53 Total: 26.67 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.38 Total: -5.33 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -1.26 Total: -86.17 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.65 Total: -49.59 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.90 Total: 40.68 kcal Total: -76.64 2.90 -73.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260158636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.921 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds