Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47555 * 299.99953 * 3 2 1 6 6 H 1.48508 * 109.47373 * 60.00022 * 3 2 1 7 7 C 1.37871 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52634 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.28182 * 177.61761 * 10 9 7 12 12 N 1.46849 * 109.52442 * 300.82868 * 11 10 9 13 13 C 1.46901 * 110.99649 * 185.83742 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99608 * 13 12 11 15 15 O 1.20826 * 119.99939 * 359.97438 * 14 13 12 16 16 O 1.34230 * 120.00046 * 179.97438 * 14 13 12 17 17 C 1.46839 * 111.20047 * 61.73811 * 12 11 10 18 18 C 1.53034 * 109.52552 * 298.25821 * 17 12 11 19 19 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.52441 * 59.86753 * 9 7 2 21 21 H 1.09005 * 109.50142 * 57.68544 * 10 9 7 22 22 H 1.08998 * 109.50777 * 297.56442 * 10 9 7 23 23 H 1.08991 * 109.46218 * 180.80508 * 11 10 9 24 24 H 1.09005 * 109.44695 * 60.83538 * 11 10 9 25 25 H 1.09002 * 109.47401 * 49.99636 * 13 12 11 26 26 H 1.09001 * 109.46874 * 289.99649 * 13 12 11 27 27 H 0.96691 * 117.00026 * 180.02562 * 16 14 13 28 28 H 1.09006 * 109.46266 * 58.27078 * 17 12 11 29 29 H 1.09002 * 109.46276 * 178.24270 * 17 12 11 30 30 H 1.09006 * 109.50444 * 299.24199 * 18 17 12 31 31 H 1.09003 * 109.50687 * 179.12283 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9852 0.0606 12 7 0.6531 -5.0194 1.2770 13 6 0.0068 -6.3286 1.4389 14 6 -0.6223 -6.4127 2.8057 15 8 -0.5401 -5.4781 3.5671 16 8 -1.2738 -7.5259 3.1774 17 6 -0.3405 -3.9383 1.2771 18 6 0.3751 -2.5858 1.2535 19 1 -0.4850 0.8401 0.0004 20 1 0.6226 -2.5569 -0.8882 21 1 2.8990 -3.5841 0.8689 22 1 2.8429 -3.6322 -0.9103 23 1 2.1803 -5.8160 0.0752 24 1 0.8315 -5.0703 -0.8151 25 1 0.7517 -7.1173 1.3326 26 1 -0.7627 -6.4506 0.6766 27 1 -1.6610 -7.5328 4.0633 28 1 -0.9756 -4.0286 0.3958 29 1 -0.9540 -4.0090 2.1754 30 1 0.9998 -2.4891 2.1415 31 1 -0.3629 -1.7838 1.2378 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260628998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = -116.803324 kcal Electronic energy + Delta-G solvation = -14589.829898 eV Core-core repulsion = 12062.900243 eV Total energy + Delta-G solvation = -2526.929654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.32497 -39.48908 -37.01578 -35.70270 -33.33263 -31.45666 -29.43067 -26.82965 -23.82754 -23.62409 -22.01218 -20.38738 -18.96356 -18.43574 -17.42830 -16.94343 -16.78866 -16.23082 -15.53400 -14.97835 -14.75808 -14.35794 -14.05306 -13.65754 -13.27022 -13.07353 -12.85893 -12.59028 -12.37853 -12.33434 -12.02670 -11.86159 -11.54748 -11.29470 -10.80638 -10.59130 -10.36989 -9.25910 -8.07655 -6.20735 1.29695 1.39853 1.41765 1.53231 2.03560 2.44261 3.07496 3.19597 4.12686 4.21171 4.29561 4.38430 4.47456 4.49699 4.60562 4.78250 4.91232 5.00992 5.10029 5.23555 5.33372 5.56820 5.62653 5.71341 5.98257 5.98809 6.18537 6.27172 6.41627 6.91610 7.10858 7.47046 8.97294 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057889 B = 0.007332 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.569162 B = 3817.832112 C = 4082.052408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.042 3.958 10 C -0.102 4.102 11 C 0.068 3.932 12 N -0.541 5.541 13 C 0.060 3.940 14 C 0.480 3.520 15 O -0.539 6.539 16 O -0.511 6.511 17 C 0.065 3.935 18 C -0.092 4.092 19 H 0.259 0.741 20 H -0.006 1.006 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.103 0.897 24 H 0.036 0.964 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.426 0.574 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 -14.568 2.007 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.139 4.139 11 C -0.058 4.058 12 N -0.267 5.267 13 C -0.068 4.068 14 C 0.323 3.677 15 O -0.428 6.428 16 O -0.324 6.324 17 C -0.062 4.062 18 C -0.130 4.130 19 H 0.068 0.932 20 H 0.012 0.988 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.121 0.879 24 H 0.054 0.946 25 H 0.165 0.835 26 H 0.110 0.890 27 H 0.288 0.712 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.792 -14.133 2.223 14.329 hybrid contribution -0.624 1.246 0.073 1.396 sum -1.416 -12.887 2.295 13.166 Atomic orbital electron populations 1.70034 1.07206 1.26934 1.51768 1.25775 0.95700 1.02488 0.94947 0.85565 0.79151 0.79786 0.77508 1.19077 1.20467 1.20916 1.21638 0.93051 0.92296 1.49963 0.92981 1.18704 0.93273 0.92923 0.92800 1.21560 0.97955 0.93961 1.00460 1.22127 0.95992 0.98874 0.88847 1.61578 1.23822 1.01645 1.39691 1.21688 1.00633 0.94104 0.90403 1.23650 0.74746 0.79159 0.90127 1.90737 1.57489 1.39583 1.55022 1.84459 1.66271 1.40118 1.41581 1.22127 0.93151 0.91919 0.99044 1.21372 0.99087 0.94505 0.98085 0.93166 0.98790 0.93381 0.91944 0.87901 0.94577 0.83491 0.89042 0.71215 0.96065 0.91532 0.95975 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 11.37 21.45 0.24 -54.57 16 2 C 0.01 0.51 5.31 84.65 0.45 0.96 16 3 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.53 -30.26 8.56 25.60 0.22 -30.04 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.04 2.14 2.16 -11.46 -0.02 2.12 16 10 C -0.10 -4.18 5.32 30.65 0.16 -4.01 16 11 C 0.07 2.18 5.46 86.33 0.47 2.66 16 12 N -0.54 -18.60 4.40 -900.93 -3.96 -22.56 16 13 C 0.06 1.45 5.56 85.56 0.48 1.92 16 14 C 0.48 12.70 8.00 71.24 0.57 13.27 16 15 O -0.54 -19.48 15.09 21.97 0.33 -19.15 16 16 O -0.51 -9.23 13.42 -51.41 -0.69 -9.92 16 17 C 0.07 2.71 5.11 86.33 0.44 3.15 16 18 C -0.09 -4.71 5.12 30.65 0.16 -4.56 16 19 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 20 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 21 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 22 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 24 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.15 2.51 7.99 -2.39 -0.02 2.49 16 26 H 0.09 1.90 8.12 -2.39 -0.02 1.88 16 27 H 0.43 4.30 9.10 -74.06 -0.67 3.63 16 28 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 2.82 5.79 -2.39 -0.01 2.81 16 30 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.06 3.33 6.18 -2.39 -0.01 3.31 16 Total: -1.00 -70.48 255.84 1.32 -69.16 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 0.45 Total: 4.60 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 2.92 Total: -14.53 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -3.72 Total: -77.13 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.36 Total: -29.06 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.48 1.32 -69.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260628998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.641 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds