Wall clock time and date at job start Sun Mar 29 2020 21:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47109 * 2 1 4 4 C 1.46895 * 110.99733 * 76.17984 * 3 2 1 5 5 C 1.50699 * 109.47533 * 66.85181 * 4 3 2 6 6 H 1.08002 * 119.99912 * 354.70637 * 5 4 3 7 7 C 1.37877 * 120.00455 * 174.70828 * 5 4 3 8 8 N 1.31517 * 120.00011 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99570 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47021 * 90.00301 * 9 7 5 11 11 H 1.48500 * 109.46825 * 209.99733 * 9 7 5 12 12 H 1.48492 * 109.47208 * 329.99613 * 9 7 5 13 13 C 1.46899 * 110.99726 * 200.13427 * 3 2 1 14 14 H 1.09009 * 110.28818 * 293.91423 * 13 3 2 15 15 C 1.54263 * 110.32915 * 56.04617 * 13 3 2 16 16 C 1.54379 * 105.05984 * 118.89295 * 15 13 3 17 17 N 1.48559 * 104.59611 * 23.85346 * 16 15 13 18 18 C 1.46897 * 111.00187 * 200.95770 * 17 16 15 19 19 C 1.48555 * 104.22240 * 320.52074 * 17 16 15 20 20 H 1.08996 * 109.47388 * 294.75855 * 1 2 3 21 21 H 1.08995 * 109.47139 * 54.76248 * 1 2 3 22 22 H 1.09003 * 109.46849 * 174.75976 * 1 2 3 23 23 H 1.09001 * 109.47447 * 240.00042 * 2 1 3 24 24 H 1.08999 * 109.47564 * 119.99966 * 2 1 3 25 25 H 1.08993 * 109.47516 * 306.84796 * 4 3 2 26 26 H 1.09002 * 109.47048 * 186.84614 * 4 3 2 27 27 H 0.96999 * 119.99720 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.32088 * 237.79236 * 15 13 3 29 29 H 1.08996 * 110.31773 * 0.02562 * 15 13 3 30 30 H 1.08994 * 110.40627 * 142.63446 * 16 15 13 31 31 H 1.09000 * 110.41118 * 264.96044 * 16 15 13 32 32 H 1.08995 * 109.46892 * 59.87303 * 18 17 16 33 33 H 1.09001 * 109.47047 * 179.87696 * 18 17 16 34 34 H 1.09003 * 109.47311 * 299.87659 * 18 17 16 35 35 H 1.09009 * 110.40886 * 280.69799 * 19 17 16 36 36 H 1.08998 * 110.41292 * 158.26559 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8862 1.9905 1.3317 5 6 2.8177 1.2990 2.2936 6 1 3.3827 0.4364 1.9724 7 6 2.9488 1.7676 3.5837 8 7 3.7614 1.1638 4.4232 9 14 1.9722 3.2600 4.1389 10 1 0.6683 2.8190 4.6961 11 1 2.7351 3.9902 5.1830 12 1 1.7371 4.1572 2.9793 13 6 3.4091 1.4521 -0.4721 14 1 4.0724 0.9508 0.2329 15 6 3.5314 0.8125 -1.8705 16 6 4.0256 1.9499 -2.7900 17 7 4.7015 2.9047 -1.8743 18 6 4.7886 4.2411 -2.4778 19 6 3.8397 2.9221 -0.6643 20 1 -0.3634 0.4304 0.9331 21 1 -0.3633 0.5929 -0.8393 22 1 -0.3633 -1.0234 -0.0939 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.8589 1.8816 1.6791 26 1 2.1410 3.0489 1.2768 27 1 3.8533 1.4932 5.3309 28 1 4.2560 -0.0016 -1.8524 29 1 2.5604 0.4492 -2.2068 30 1 4.7313 1.5644 -3.5257 31 1 3.1828 2.4296 -3.2877 32 1 3.7853 4.6094 -2.6913 33 1 5.2856 4.9207 -1.7856 34 1 5.3597 4.1847 -3.4046 35 1 2.9677 3.5554 -0.8277 36 1 4.4056 3.2687 0.2004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:38 Heat of formation + Delta-G solvation = 12.624851 kcal Electronic energy + Delta-G solvation = -15067.311869 eV Core-core repulsion = 12779.546398 eV Total energy + Delta-G solvation = -2287.765471 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93517 -36.14289 -32.51451 -31.23298 -30.11803 -27.77222 -26.62288 -24.64953 -22.70363 -20.89147 -20.46103 -18.83091 -16.81664 -15.91981 -15.51248 -14.44545 -14.21107 -13.96193 -13.80382 -13.22711 -12.85850 -12.45674 -12.32020 -11.80202 -11.64770 -11.49180 -11.14026 -11.09970 -10.91046 -10.65055 -10.36877 -10.31345 -10.13746 -10.01948 -9.71051 -9.47268 -8.58438 -8.18364 -7.18211 -6.09623 -4.08742 3.27168 3.35087 3.38163 4.32952 4.39856 4.98876 5.13842 5.17161 5.24742 5.45634 5.60945 5.66426 5.76717 5.90825 5.99231 6.02238 6.03563 6.13101 6.21712 6.33355 6.37163 6.48174 6.56346 6.68060 6.86355 6.90216 6.94114 7.10405 7.18454 7.33435 7.59614 8.08279 8.16562 8.45802 8.92737 9.53272 11.03327 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.010970 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.218233 B = 2551.701601 C = 3107.665965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 N -0.530 5.530 4 C 0.150 3.850 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.088 3.912 14 H 0.068 0.932 15 C -0.124 4.124 16 C 0.037 3.963 17 N -0.519 5.519 18 C 0.016 3.984 19 C 0.048 3.952 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.029 0.971 27 H 0.263 0.737 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 2.180 -12.031 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 N -0.255 5.255 4 C 0.023 3.977 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.188 1.188 13 C -0.021 4.021 14 H 0.086 0.914 15 C -0.162 4.162 16 C -0.091 4.091 17 N -0.243 5.243 18 C -0.133 4.133 19 C -0.079 4.079 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.786 2.313 -12.055 12.404 hybrid contribution -0.750 0.640 0.931 1.356 sum -2.536 2.953 -11.124 11.785 Atomic orbital electron populations 1.21697 0.96243 1.00001 1.01767 1.22014 0.94984 0.90641 1.00612 1.62599 1.18270 1.17127 1.27454 1.20221 0.96706 0.95356 0.85373 1.21641 1.25485 1.15330 0.96030 0.90730 1.24951 0.94791 0.96643 0.96599 1.69928 1.37131 1.40806 1.05828 0.86846 0.80332 0.83738 0.78797 1.20269 1.21316 1.18814 1.22139 0.90924 0.94654 0.94421 0.91443 1.22518 1.00899 0.97342 0.95489 1.23036 0.96535 0.94055 0.95478 1.65365 1.46187 1.07354 1.05420 1.22457 0.99923 0.91185 0.99704 1.23074 0.94826 0.97281 0.92750 0.92761 0.93067 0.93532 0.92442 0.93070 0.95757 0.95269 0.92724 0.91700 0.90611 0.91016 0.94183 0.95646 0.91497 0.91881 0.93344 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.95 37.16 0.37 -1.95 16 2 C 0.05 0.86 5.27 -3.82 -0.02 0.84 16 3 N -0.53 -10.90 4.44 -226.43 -1.00 -11.91 16 4 C 0.15 3.57 3.89 -4.98 -0.02 3.55 16 5 C -0.55 -15.00 7.89 -34.44 -0.27 -15.28 16 6 H 0.07 2.24 6.26 -52.49 -0.33 1.91 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 9 Si 0.88 21.39 27.58 -169.99 -4.69 16.70 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.20 6.39 56.52 0.36 -5.83 16 13 C 0.09 1.73 2.46 -66.33 -0.16 1.57 16 14 H 0.07 1.56 6.39 -51.92 -0.33 1.23 16 15 C -0.12 -1.99 5.86 -25.35 -0.15 -2.14 16 16 C 0.04 0.54 6.49 -2.18 -0.01 0.53 16 17 N -0.52 -8.50 5.66 -238.24 -1.35 -9.85 16 18 C 0.02 0.22 9.53 60.06 0.57 0.79 16 19 C 0.05 0.91 5.06 -2.19 -0.01 0.90 16 20 H 0.05 0.97 7.02 -51.93 -0.36 0.61 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.97 5.73 -51.93 -0.30 0.67 16 24 H 0.05 1.12 6.55 -51.93 -0.34 0.78 16 25 H 0.02 0.58 6.50 -51.93 -0.34 0.25 16 26 H 0.03 0.71 5.98 -51.93 -0.31 0.40 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.16 6.36 -51.93 -0.33 0.83 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.57 7.97 -51.93 -0.41 0.15 16 32 H 0.02 0.33 7.98 -51.93 -0.41 -0.08 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.92 7.72 -51.92 -0.40 0.52 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 273.89 15.07 4.13 4.13 Total: -1.00 -29.26 273.89 -7.95 -37.21 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.01 Total: -0.56 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 0.20 Total: -9.20 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.58 Total: -48.28 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.69 Total: 16.70 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.26 -7.95 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.831 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds