Wall clock time and date at job start Sun Mar 29 2020 21:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47109 * 2 1 4 4 C 1.46895 * 110.99733 * 76.17984 * 3 2 1 5 5 C 1.50699 * 109.47533 * 66.85181 * 4 3 2 6 6 H 1.08002 * 119.99912 * 354.70637 * 5 4 3 7 7 C 1.37877 * 120.00455 * 174.70828 * 5 4 3 8 8 N 1.31517 * 120.00011 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99570 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47021 * 90.00301 * 9 7 5 11 11 H 1.48500 * 109.46825 * 209.99733 * 9 7 5 12 12 H 1.48492 * 109.47208 * 329.99613 * 9 7 5 13 13 C 1.46899 * 110.99726 * 200.13427 * 3 2 1 14 14 H 1.09009 * 110.28818 * 293.91423 * 13 3 2 15 15 C 1.54263 * 110.32915 * 56.04617 * 13 3 2 16 16 C 1.54379 * 105.05984 * 118.89295 * 15 13 3 17 17 N 1.48559 * 104.59611 * 23.85346 * 16 15 13 18 18 C 1.46897 * 111.00187 * 200.95770 * 17 16 15 19 19 C 1.48555 * 104.22240 * 320.52074 * 17 16 15 20 20 H 1.08996 * 109.47388 * 294.75855 * 1 2 3 21 21 H 1.08995 * 109.47139 * 54.76248 * 1 2 3 22 22 H 1.09003 * 109.46849 * 174.75976 * 1 2 3 23 23 H 1.09001 * 109.47447 * 240.00042 * 2 1 3 24 24 H 1.08999 * 109.47564 * 119.99966 * 2 1 3 25 25 H 1.08993 * 109.47516 * 306.84796 * 4 3 2 26 26 H 1.09002 * 109.47048 * 186.84614 * 4 3 2 27 27 H 0.96999 * 119.99720 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.32088 * 237.79236 * 15 13 3 29 29 H 1.08996 * 110.31773 * 0.02562 * 15 13 3 30 30 H 1.08994 * 110.40627 * 142.63446 * 16 15 13 31 31 H 1.09000 * 110.41118 * 264.96044 * 16 15 13 32 32 H 1.08995 * 109.46892 * 59.87303 * 18 17 16 33 33 H 1.09001 * 109.47047 * 179.87696 * 18 17 16 34 34 H 1.09003 * 109.47311 * 299.87659 * 18 17 16 35 35 H 1.09009 * 110.40886 * 280.69799 * 19 17 16 36 36 H 1.08998 * 110.41292 * 158.26559 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8862 1.9905 1.3317 5 6 2.8177 1.2990 2.2936 6 1 3.3827 0.4364 1.9724 7 6 2.9488 1.7676 3.5837 8 7 3.7614 1.1638 4.4232 9 14 1.9722 3.2600 4.1389 10 1 0.6683 2.8190 4.6961 11 1 2.7351 3.9902 5.1830 12 1 1.7371 4.1572 2.9793 13 6 3.4091 1.4521 -0.4721 14 1 4.0724 0.9508 0.2329 15 6 3.5314 0.8125 -1.8705 16 6 4.0256 1.9499 -2.7900 17 7 4.7015 2.9047 -1.8743 18 6 4.7886 4.2411 -2.4778 19 6 3.8397 2.9221 -0.6643 20 1 -0.3634 0.4304 0.9331 21 1 -0.3633 0.5929 -0.8393 22 1 -0.3633 -1.0234 -0.0939 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.8589 1.8816 1.6791 26 1 2.1410 3.0489 1.2768 27 1 3.8533 1.4932 5.3309 28 1 4.2560 -0.0016 -1.8524 29 1 2.5604 0.4492 -2.2068 30 1 4.7313 1.5644 -3.5257 31 1 3.1828 2.4296 -3.2877 32 1 3.7853 4.6094 -2.6913 33 1 5.2856 4.9207 -1.7856 34 1 5.3597 4.1847 -3.4046 35 1 2.9677 3.5554 -0.8277 36 1 4.4056 3.2687 0.2004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:38 Heat of formation + Delta-G solvation = -9.323491 kcal Electronic energy + Delta-G solvation = -15068.263620 eV Core-core repulsion = 12779.546398 eV Total energy + Delta-G solvation = -2288.717223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40072 -37.68109 -34.63661 -32.57528 -31.73557 -29.41273 -28.17682 -26.08411 -24.40679 -22.47209 -21.80308 -20.56461 -18.83310 -17.46898 -16.90243 -16.38699 -15.74072 -15.55114 -15.09967 -14.67661 -14.49401 -14.09731 -13.83948 -13.49774 -13.28379 -12.85904 -12.62163 -12.47950 -12.35843 -12.29409 -12.03839 -11.82495 -11.76147 -11.65709 -11.56782 -11.30203 -10.78139 -9.43565 -8.98664 -8.31238 -6.34996 1.33017 1.34724 1.45865 2.32554 2.99036 3.04038 3.49222 3.78441 3.84347 4.24288 4.26924 4.41441 4.52806 4.58274 4.61856 4.71363 4.78877 4.79342 4.93092 4.95461 4.99537 5.03492 5.08509 5.14487 5.18833 5.22112 5.31307 5.45963 5.54699 5.81791 6.09607 6.14636 6.37748 6.49753 6.71261 7.30803 8.85208 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.010970 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.218233 B = 2551.701601 C = 3107.665965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.044 3.956 3 N -0.521 5.521 4 C 0.160 3.840 5 C -0.541 4.541 6 H 0.033 0.967 7 C 0.011 3.989 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.246 1.246 13 C 0.083 3.917 14 H 0.020 0.980 15 C -0.117 4.117 16 C 0.043 3.957 17 N -0.534 5.534 18 C 0.016 3.984 19 C 0.056 3.944 20 H 0.036 0.964 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.012 0.988 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 3.291 -14.251 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 N -0.244 5.244 4 C 0.032 3.968 5 C -0.579 4.579 6 H 0.051 0.949 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.169 1.169 13 C -0.026 4.026 14 H 0.038 0.962 15 C -0.155 4.155 16 C -0.085 4.085 17 N -0.258 5.258 18 C -0.133 4.133 19 C -0.072 4.072 20 H 0.055 0.945 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.030 0.970 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.168 3.420 -14.308 15.049 hybrid contribution -0.240 0.198 1.564 1.594 sum -3.408 3.618 -12.745 13.680 Atomic orbital electron populations 1.21649 0.93914 1.01882 1.01515 1.22118 0.96884 0.89465 0.99950 1.62677 1.18714 1.17980 1.25042 1.20034 0.95608 0.94963 0.86147 1.21835 1.25197 1.14030 0.96886 0.94928 1.25884 0.96024 1.00064 0.96732 1.70082 1.39372 1.43023 1.06385 0.85759 0.78867 0.79863 0.78786 1.19125 1.21083 1.16933 1.22141 0.89372 0.95505 0.95622 0.96231 1.22473 1.01914 0.97982 0.93105 1.23088 0.97496 0.92898 0.95022 1.65335 1.45800 1.09467 1.05233 1.22535 1.00741 0.89518 1.00474 1.22849 0.94742 0.96304 0.93317 0.94468 0.91391 0.91019 0.89952 0.96984 0.95324 0.95394 0.92628 0.91317 0.89267 0.88610 0.92848 0.94963 0.91637 0.89456 0.93268 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.95 71.98 0.72 -3.39 16 2 C 0.04 1.64 5.27 86.30 0.45 2.09 16 3 N -0.52 -21.22 4.44 -870.29 -3.86 -25.09 16 4 C 0.16 7.63 3.89 85.56 0.33 7.97 16 5 C -0.54 -30.90 7.89 25.60 0.20 -30.70 16 6 H 0.03 2.10 6.26 -2.91 -0.02 2.08 16 7 C 0.01 0.63 5.47 84.65 0.46 1.09 16 8 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 9 Si 0.94 44.38 27.58 68.60 1.89 46.27 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.25 -10.76 6.39 99.48 0.64 -10.13 16 13 C 0.08 3.30 2.46 45.81 0.11 3.42 16 14 H 0.02 0.96 6.39 -2.38 -0.02 0.95 16 15 C -0.12 -3.52 5.86 31.49 0.18 -3.34 16 16 C 0.04 1.11 6.49 86.45 0.56 1.68 16 17 N -0.53 -16.57 5.66 -907.66 -5.14 -21.70 16 18 C 0.02 0.38 9.53 127.69 1.22 1.60 16 19 C 0.06 2.11 5.06 86.45 0.44 2.55 16 20 H 0.04 1.27 7.02 -2.39 -0.02 1.25 16 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.08 2.64 5.73 -2.39 -0.01 2.63 16 24 H 0.01 0.54 6.55 -2.39 -0.02 0.52 16 25 H 0.03 1.35 6.50 -2.39 -0.02 1.34 16 26 H 0.03 1.35 5.98 -2.39 -0.01 1.33 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.09 2.46 6.36 -2.39 -0.02 2.44 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.28 7.97 -2.39 -0.02 1.27 16 32 H 0.03 0.74 7.98 -2.39 -0.02 0.72 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.82 7.72 -2.38 -0.02 1.80 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -65.41 273.89 -1.16 -66.58 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.96 Total: 10.49 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.68 Total: -17.05 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -8.70 Total: -106.29 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.89 Total: 46.27 kcal Total: -65.41 -1.16 -66.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.254 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds