Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47193 * 2 1 4 4 C 1.46959 * 111.00190 * 313.81018 * 3 2 1 5 5 C 1.53050 * 109.36629 * 176.80799 * 4 3 2 6 6 N 1.46960 * 109.36394 * 58.39792 * 5 4 3 7 7 C 1.46895 * 110.99996 * 176.81475 * 6 5 4 8 8 C 1.50706 * 109.47182 * 293.79758 * 7 6 5 9 9 H 1.08000 * 119.99302 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00436 * 179.72677 * 8 7 6 11 11 N 1.31514 * 120.00481 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99745 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47209 * 90.00365 * 12 10 8 14 14 H 1.48506 * 109.47294 * 210.00213 * 12 10 8 15 15 H 1.48501 * 109.47275 * 330.00116 * 12 10 8 16 16 C 1.46958 * 110.87909 * 300.68058 * 6 5 4 17 17 H 1.09003 * 109.48705 * 299.32975 * 16 6 5 18 18 C 1.53001 * 109.48983 * 179.28803 * 16 6 5 19 19 C 1.46951 * 111.00326 * 190.00351 * 3 2 1 20 20 H 1.09003 * 109.47269 * 299.99129 * 1 2 3 21 21 H 1.08992 * 109.48049 * 59.99471 * 1 2 3 22 22 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46646 * 240.00992 * 2 1 3 24 24 H 1.08992 * 109.47781 * 120.01009 * 2 1 3 25 25 H 1.08999 * 109.48370 * 296.77218 * 4 3 2 26 26 H 1.08996 * 109.49148 * 56.81654 * 4 3 2 27 27 H 1.09000 * 109.48508 * 298.43225 * 5 4 3 28 28 H 1.09000 * 109.48994 * 178.36162 * 5 4 3 29 29 H 1.09001 * 109.47613 * 173.80104 * 7 6 5 30 30 H 1.08998 * 109.47678 * 53.79999 * 7 6 5 31 31 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.46869 * 59.99601 * 18 16 6 33 33 H 1.08996 * 109.47643 * 179.97438 * 18 16 6 34 34 H 1.09004 * 109.47297 * 300.00380 * 18 16 6 35 35 H 1.09000 * 109.48790 * 63.22828 * 19 3 2 36 36 H 1.08996 * 109.50964 * 303.17224 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2998 2.1981 -0.9901 5 6 1.7823 3.6480 -0.9035 6 7 3.2317 3.6942 -1.1418 7 6 3.7214 5.0791 -1.1417 8 6 3.1435 5.8164 -2.3223 9 1 2.4787 5.3070 -3.0042 10 6 3.4587 7.1426 -2.5284 11 7 2.9541 7.7861 -3.5584 12 14 4.6014 8.0261 -1.3438 13 1 6.0048 7.8780 -1.8066 14 1 4.2458 9.4671 -1.2948 15 1 4.4622 7.4355 0.0115 16 6 3.9515 2.8810 -0.1517 17 1 3.7581 3.2700 0.8480 18 6 5.4532 2.9372 -0.4396 19 6 3.4690 1.4312 -0.2383 20 1 -0.3634 0.5137 0.8901 21 1 -0.3635 0.5138 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8902 24 1 1.8934 -0.5139 0.8898 25 1 1.4935 1.8095 -1.9898 26 1 0.2300 2.1578 -0.7852 27 1 1.5639 4.0453 0.0878 28 1 1.2707 4.2472 -1.6567 29 1 4.8092 5.0800 -1.2099 30 1 3.4148 5.5729 -0.2196 31 1 3.1755 8.7193 -3.7032 32 1 5.7961 3.9702 -0.3797 33 1 5.9868 2.3344 0.2952 34 1 5.6464 2.5476 -1.4391 35 1 3.6873 1.0339 -1.2296 36 1 3.9809 0.8319 0.5145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = 11.985605 kcal Electronic energy + Delta-G solvation = -14923.193894 eV Core-core repulsion = 12635.400703 eV Total energy + Delta-G solvation = -2287.793191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.09320 -35.81767 -32.77501 -31.74547 -30.67914 -28.23650 -26.54076 -24.61422 -22.82895 -21.31704 -20.29712 -19.03088 -16.81610 -15.89321 -15.01303 -14.83544 -14.67021 -14.28593 -13.61133 -13.50345 -12.94980 -12.63827 -12.44183 -12.06027 -11.82272 -11.49220 -11.38787 -11.27748 -10.97035 -10.88018 -10.63129 -10.41666 -10.25676 -9.84909 -9.71595 -9.19546 -8.53578 -8.08996 -7.30635 -6.03283 -3.99908 3.29546 3.37096 3.39810 4.11958 4.43888 4.73707 5.04703 5.18767 5.26745 5.30192 5.45825 5.53287 5.61573 5.70480 5.78834 5.84952 5.93874 5.94437 6.04199 6.06170 6.15168 6.31632 6.40469 6.51161 6.67340 6.71005 6.91451 7.02594 7.29177 7.32519 7.64895 7.97251 8.11504 8.69544 9.04973 9.58964 11.09919 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044529 B = 0.008253 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.651772 B = 3391.715619 C = 3815.954542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 N -0.543 5.543 4 C 0.053 3.947 5 C 0.067 3.933 6 N -0.525 5.525 7 C 0.158 3.842 8 C -0.507 4.507 9 H 0.080 0.920 10 C 0.068 3.932 11 N -0.902 5.902 12 Si 0.873 3.127 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.079 3.921 17 H 0.037 0.963 18 C -0.145 4.145 19 C 0.067 3.933 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.263 0.737 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -13.074 7.743 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.075 4.075 5 C -0.062 4.062 6 N -0.250 5.250 7 C 0.032 3.968 8 C -0.546 4.546 9 H 0.098 0.902 10 C -0.133 4.133 11 N -0.541 5.541 12 Si 0.700 3.300 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.031 4.031 17 H 0.055 0.945 18 C -0.203 4.203 19 C -0.061 4.061 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.005 0.995 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.792 -12.896 7.653 15.017 hybrid contribution 0.633 0.610 0.544 1.034 sum -0.158 -12.286 8.197 14.771 Atomic orbital electron populations 1.21923 0.95246 1.01437 1.02674 1.22043 0.95626 0.89740 1.00247 1.62250 1.04370 1.10062 1.50116 1.22345 0.97865 0.94095 0.93214 1.22037 0.89661 0.94297 1.00191 1.62134 1.02929 1.13368 1.46560 1.20251 0.96074 0.84037 0.96454 1.21044 1.29063 0.95022 1.09431 0.90245 1.24889 0.95950 0.97300 0.95190 1.69892 1.44905 1.10625 1.28662 0.86888 0.81668 0.79137 0.82265 1.20145 1.21215 1.19236 1.21593 0.94081 0.92940 0.94462 0.94495 1.21866 0.94540 1.02249 1.01601 1.22154 0.87570 0.96848 0.99541 0.91900 0.92137 0.92568 0.95231 0.91215 0.94343 0.90450 0.95386 0.89017 0.95102 0.99534 0.92712 0.91849 0.93120 0.91931 0.94236 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.17 37.16 0.34 -1.31 16 2 C 0.05 0.63 6.00 -3.83 -0.02 0.60 16 3 N -0.54 -8.31 4.86 -234.48 -1.14 -9.44 16 4 C 0.05 0.87 4.93 -3.77 -0.02 0.85 16 5 C 0.07 1.34 5.43 -3.77 -0.02 1.31 16 6 N -0.52 -11.31 4.52 -227.92 -1.03 -12.34 16 7 C 0.16 3.90 3.56 -4.98 -0.02 3.88 16 8 C -0.51 -14.53 9.03 -34.44 -0.31 -14.84 16 9 H 0.08 2.47 7.37 -52.49 -0.39 2.08 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 12 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 16 C 0.08 1.42 2.56 -67.65 -0.17 1.25 16 17 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.14 -2.36 8.89 37.16 0.33 -2.03 16 19 C 0.07 1.04 4.86 -3.77 -0.02 1.02 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.67 6.26 -51.93 -0.33 0.34 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.03 0.36 8.08 -51.92 -0.42 -0.06 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.13 5.99 -51.93 -0.31 0.82 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 2.01 6.79 -51.93 -0.35 1.66 16 29 H 0.03 0.76 5.17 -51.93 -0.27 0.49 16 30 H -0.01 -0.33 7.16 -51.93 -0.37 -0.70 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.06 1.11 6.15 -51.93 -0.32 0.79 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 274.15 15.07 4.13 4.13 Total: -1.00 -30.36 274.15 -8.09 -38.45 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.15 Total: -3.44 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.01 Total: -7.38 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -1.40 Total: -48.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.36 -8.09 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.437 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds