Wall clock time and date at job start Sun Mar 29 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47193 * 2 1 4 4 C 1.46959 * 111.00190 * 313.81018 * 3 2 1 5 5 C 1.53050 * 109.36629 * 176.80799 * 4 3 2 6 6 N 1.46960 * 109.36394 * 58.39792 * 5 4 3 7 7 C 1.46895 * 110.99996 * 176.81475 * 6 5 4 8 8 C 1.50706 * 109.47182 * 293.79758 * 7 6 5 9 9 H 1.08000 * 119.99302 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00436 * 179.72677 * 8 7 6 11 11 N 1.31514 * 120.00481 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99745 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47209 * 90.00365 * 12 10 8 14 14 H 1.48506 * 109.47294 * 210.00213 * 12 10 8 15 15 H 1.48501 * 109.47275 * 330.00116 * 12 10 8 16 16 C 1.46958 * 110.87909 * 300.68058 * 6 5 4 17 17 H 1.09003 * 109.48705 * 299.32975 * 16 6 5 18 18 C 1.53001 * 109.48983 * 179.28803 * 16 6 5 19 19 C 1.46951 * 111.00326 * 190.00351 * 3 2 1 20 20 H 1.09003 * 109.47269 * 299.99129 * 1 2 3 21 21 H 1.08992 * 109.48049 * 59.99471 * 1 2 3 22 22 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46646 * 240.00992 * 2 1 3 24 24 H 1.08992 * 109.47781 * 120.01009 * 2 1 3 25 25 H 1.08999 * 109.48370 * 296.77218 * 4 3 2 26 26 H 1.08996 * 109.49148 * 56.81654 * 4 3 2 27 27 H 1.09000 * 109.48508 * 298.43225 * 5 4 3 28 28 H 1.09000 * 109.48994 * 178.36162 * 5 4 3 29 29 H 1.09001 * 109.47613 * 173.80104 * 7 6 5 30 30 H 1.08998 * 109.47678 * 53.79999 * 7 6 5 31 31 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.46869 * 59.99601 * 18 16 6 33 33 H 1.08996 * 109.47643 * 179.97438 * 18 16 6 34 34 H 1.09004 * 109.47297 * 300.00380 * 18 16 6 35 35 H 1.09000 * 109.48790 * 63.22828 * 19 3 2 36 36 H 1.08996 * 109.50964 * 303.17224 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2998 2.1981 -0.9901 5 6 1.7823 3.6480 -0.9035 6 7 3.2317 3.6942 -1.1418 7 6 3.7214 5.0791 -1.1417 8 6 3.1435 5.8164 -2.3223 9 1 2.4787 5.3070 -3.0042 10 6 3.4587 7.1426 -2.5284 11 7 2.9541 7.7861 -3.5584 12 14 4.6014 8.0261 -1.3438 13 1 6.0048 7.8780 -1.8066 14 1 4.2458 9.4671 -1.2948 15 1 4.4622 7.4355 0.0115 16 6 3.9515 2.8810 -0.1517 17 1 3.7581 3.2700 0.8480 18 6 5.4532 2.9372 -0.4396 19 6 3.4690 1.4312 -0.2383 20 1 -0.3634 0.5137 0.8901 21 1 -0.3635 0.5138 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8902 24 1 1.8934 -0.5139 0.8898 25 1 1.4935 1.8095 -1.9898 26 1 0.2300 2.1578 -0.7852 27 1 1.5639 4.0453 0.0878 28 1 1.2707 4.2472 -1.6567 29 1 4.8092 5.0800 -1.2099 30 1 3.4148 5.5729 -0.2196 31 1 3.1755 8.7193 -3.7032 32 1 5.7961 3.9702 -0.3797 33 1 5.9868 2.3344 0.2952 34 1 5.6464 2.5476 -1.4391 35 1 3.6873 1.0339 -1.2296 36 1 3.9809 0.8319 0.5145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091403.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:18 Heat of formation + Delta-G solvation = -10.502461 kcal Electronic energy + Delta-G solvation = -14924.169050 eV Core-core repulsion = 12635.400703 eV Total energy + Delta-G solvation = -2288.768346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49468 -37.23232 -34.79694 -33.32631 -31.95356 -29.86251 -28.11588 -26.06856 -24.14659 -23.13954 -21.55135 -20.52496 -18.96746 -17.25712 -16.58291 -16.26593 -16.08674 -15.72630 -15.27544 -15.04997 -14.55486 -14.16003 -14.08347 -13.28165 -13.14143 -12.93688 -12.79821 -12.59367 -12.47510 -12.35657 -12.09489 -11.91686 -11.85363 -11.70902 -11.26991 -11.21172 -10.75673 -9.30410 -9.02356 -8.29129 -6.31965 1.33119 1.34859 1.45676 2.33463 2.95323 3.03350 3.16999 3.90096 4.04697 4.10252 4.28190 4.31042 4.40819 4.45372 4.51232 4.62439 4.69896 4.79567 4.84652 4.85755 4.94985 5.03382 5.05144 5.11423 5.16899 5.19677 5.31751 5.34387 5.56943 5.95979 6.05936 6.18495 6.39430 6.67216 6.73651 7.31444 8.87530 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044529 B = 0.008253 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.651772 B = 3391.715619 C = 3815.954542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 N -0.550 5.550 4 C 0.066 3.934 5 C 0.068 3.932 6 N -0.540 5.540 7 C 0.170 3.830 8 C -0.516 4.516 9 H 0.036 0.964 10 C 0.009 3.991 11 N -0.948 5.948 12 Si 0.945 3.055 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.255 1.255 16 C 0.074 3.926 17 H 0.031 0.969 18 C -0.141 4.141 19 C 0.072 3.928 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.032 0.968 24 H 0.088 0.912 25 H 0.028 0.972 26 H 0.097 0.903 27 H 0.022 0.978 28 H 0.058 0.942 29 H 0.039 0.961 30 H -0.021 1.021 31 H 0.267 0.733 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -14.631 9.755 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 N -0.276 5.276 4 C -0.063 4.063 5 C -0.060 4.060 6 N -0.265 5.265 7 C 0.043 3.957 8 C -0.554 4.554 9 H 0.055 0.945 10 C -0.188 4.188 11 N -0.588 5.588 12 Si 0.769 3.231 13 H -0.186 1.186 14 H -0.206 1.206 15 H -0.179 1.179 16 C -0.035 4.035 17 H 0.049 0.951 18 C -0.198 4.198 19 C -0.056 4.056 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.046 0.954 26 H 0.115 0.885 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.057 0.943 30 H -0.003 1.003 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.272 -14.489 9.673 17.423 hybrid contribution 0.230 1.020 -0.124 1.053 sum 0.502 -13.469 9.548 16.518 Atomic orbital electron populations 1.21904 0.94171 1.02795 1.02134 1.22165 0.96573 0.87727 1.01203 1.62269 1.04217 1.11912 1.49178 1.22167 0.99024 0.91799 0.93262 1.21964 0.88963 0.96583 0.98517 1.62080 1.03892 1.11872 1.48682 1.19995 0.96142 0.85589 0.93991 1.21258 1.28478 0.95593 1.10066 0.94536 1.25822 0.97776 0.98153 0.97082 1.70045 1.46722 1.11223 1.30855 0.85743 0.79603 0.77721 0.80080 1.18637 1.20605 1.17880 1.21782 0.94931 0.93822 0.92965 0.95056 1.21846 0.93498 1.01976 1.02528 1.22139 0.88006 0.95158 1.00282 0.92129 0.92937 0.90338 0.94956 0.89406 0.95383 0.88538 0.96006 0.92319 0.94283 1.00321 0.92413 0.93396 0.89434 0.92426 0.94842 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.17 71.98 0.66 -2.18 16 2 C 0.05 1.07 6.00 86.30 0.52 1.59 16 3 N -0.55 -15.62 4.86 -895.75 -4.35 -19.97 16 4 C 0.07 2.12 4.93 86.31 0.43 2.55 16 5 C 0.07 2.81 5.43 86.31 0.47 3.27 16 6 N -0.54 -23.44 4.52 -875.02 -3.95 -27.39 16 7 C 0.17 8.44 3.56 85.56 0.30 8.75 16 8 C -0.52 -30.61 9.03 25.60 0.23 -30.38 16 9 H 0.04 2.41 7.37 -2.91 -0.02 2.39 16 10 C 0.01 0.53 5.47 84.65 0.46 0.99 16 11 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 12 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 13 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 16 C 0.07 2.54 2.56 44.92 0.12 2.65 16 17 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 18 C -0.14 -4.26 8.89 71.98 0.64 -3.62 16 19 C 0.07 2.05 4.86 86.31 0.42 2.47 16 20 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.05 1.05 6.26 -2.39 -0.01 1.04 16 22 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.03 0.69 8.08 -2.38 -0.02 0.67 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 2.73 5.99 -2.39 -0.01 2.72 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 2.75 6.79 -2.39 -0.02 2.73 16 29 H 0.04 1.89 5.17 -2.39 -0.01 1.87 16 30 H -0.02 -1.06 7.16 -2.39 -0.02 -1.08 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.05 1.59 6.15 -2.39 -0.01 1.57 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.96 274.15 -0.91 -67.87 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 0.97 Total: 6.43 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.25 Total: -13.89 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -8.00 Total: -107.12 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -66.96 -0.91 -67.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091403.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.363 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds