Wall clock time and date at job start Sun Mar 29 2020 21:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30119 * 121.06205 * 2 1 4 4 S 1.69948 * 105.76648 * 179.97438 * 3 2 1 5 5 C 1.72303 * 94.57354 * 359.97438 * 4 3 2 6 6 N 1.38310 * 127.50266 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00447 * 0.02779 * 6 5 4 8 8 C 1.52997 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47288 * 59.99994 * 13 11 9 15 15 H 1.48503 * 109.47086 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46819 * 299.99648 * 13 11 9 17 17 N 1.31289 * 121.06212 * 180.28846 * 2 1 3 18 18 H 1.08995 * 109.47559 * 89.97531 * 1 2 3 19 19 H 1.09005 * 109.47401 * 209.97715 * 1 2 3 20 20 H 1.09007 * 109.47410 * 329.97295 * 1 2 3 21 21 H 0.97006 * 119.99798 * 180.02562 * 6 5 4 22 22 H 1.09001 * 109.47059 * 60.00042 * 7 6 5 23 23 H 1.09004 * 109.47074 * 299.99998 * 7 6 5 24 24 H 1.09001 * 109.46832 * 60.00150 * 8 7 6 25 25 H 1.09000 * 109.47611 * 300.00447 * 8 7 6 26 26 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1146 0.0000 4 16 3.8176 0.6663 0.0007 5 6 3.4971 -1.0267 0.0018 6 7 4.4185 -2.0581 0.0022 7 6 5.8527 -1.7593 0.0024 8 6 6.6462 -3.0674 0.0035 9 6 8.1216 -2.7599 0.0031 10 1 8.4593 -1.7341 0.0025 11 6 9.0401 -3.7881 0.0034 12 7 8.6287 -5.0373 0.0036 13 14 10.8688 -3.4070 0.0036 14 1 11.2104 -2.6205 1.2159 15 1 11.6390 -4.6766 0.0046 16 1 11.2107 -2.6210 -1.2091 17 7 2.1844 -1.1246 -0.0057 18 1 -0.3634 0.0004 -1.0276 19 1 -0.3634 -0.8902 0.5135 20 1 -0.3634 0.8898 0.5143 21 1 4.1151 -2.9795 0.0024 22 1 6.1034 -1.1819 0.8923 23 1 6.1037 -1.1823 -0.8877 24 1 6.3956 -3.6451 -0.8862 25 1 6.3951 -3.6440 0.8938 26 1 9.2749 -5.7607 0.0042 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105430.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:01 Heat of formation + Delta-G solvation = 37.523743 kcal Electronic energy + Delta-G solvation = -11394.640804 eV Core-core repulsion = 9213.615801 eV Total energy + Delta-G solvation = -2181.025003 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.84033 -36.56803 -33.39336 -31.76527 -29.50075 -29.37603 -25.06740 -23.04055 -21.65341 -19.62388 -18.43084 -16.98652 -16.14287 -15.52016 -14.79671 -14.40541 -14.21959 -13.84443 -12.71404 -12.63145 -12.38405 -11.63359 -11.39661 -11.37602 -11.24529 -10.92074 -10.78393 -10.25736 -9.85586 -9.49215 -9.36963 -9.13275 -8.56261 -7.83843 -6.21776 -4.26868 1.04154 1.29532 2.08872 2.93677 3.12610 3.23438 3.28547 3.31721 4.30554 4.54997 5.15545 5.30305 5.49450 5.57448 5.79035 5.89739 5.94646 6.16373 6.35408 6.79829 7.33946 7.38394 7.47987 7.73723 8.02757 8.11161 8.77950 9.39113 10.89548 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082153 B = 0.005618 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.746715 B = 4982.557988 C = 5297.554581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.303 3.697 3 N -0.521 5.521 4 S 0.168 5.832 5 C 0.351 3.649 6 N -0.652 5.652 7 C 0.114 3.886 8 C 0.015 3.985 9 C -0.529 4.529 10 H 0.061 0.939 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.900 3.100 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.602 5.602 18 H 0.083 0.917 19 H 0.085 0.915 20 H 0.082 0.918 21 H 0.415 0.585 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 7.122 0.014 12.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.013 3.987 3 N -0.356 5.356 4 S 0.301 5.699 5 C -0.028 4.028 6 N -0.288 5.288 7 C -0.008 4.008 8 C -0.022 4.022 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.727 3.273 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.340 5.340 18 H 0.102 0.898 19 H 0.104 0.896 20 H 0.101 0.899 21 H 0.254 0.746 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.699 8.167 0.006 12.680 hybrid contribution 0.487 -1.194 -0.013 1.289 sum -9.212 6.974 -0.007 11.554 Atomic orbital electron populations 1.20333 0.84521 1.03898 1.03722 1.23120 0.99460 0.82604 0.93471 1.77452 0.97502 1.25327 1.35310 1.84965 1.13042 0.98686 1.73189 1.25325 0.90132 0.95751 0.91637 1.44753 1.04894 1.05755 1.73374 1.22260 0.74482 1.02796 1.01256 1.19307 0.94479 0.89875 0.98562 1.20916 0.90006 0.93220 1.52586 0.92071 1.24994 0.99532 0.94923 0.94668 1.69943 1.34820 0.98632 1.49470 0.86528 0.84249 0.77683 0.78850 1.20004 1.21147 1.19997 1.67382 1.03137 1.29822 1.33699 0.89800 0.89612 0.89924 0.74646 0.91571 0.91570 0.95405 0.95401 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.42 36.01 0.38 -0.29 15 2 C 0.30 4.71 7.56 -159.04 -1.20 3.51 15 3 N -0.52 -8.65 12.15 29.54 0.36 -8.29 15 4 S 0.17 2.73 23.17 -107.50 -2.49 0.24 15 5 C 0.35 5.98 8.57 -86.36 -0.74 5.24 15 6 N -0.65 -10.99 5.70 -61.57 -0.35 -11.34 15 7 C 0.11 2.10 5.67 -4.05 -0.02 2.08 15 8 C 0.02 0.35 5.09 -27.88 -0.14 0.21 15 9 C -0.53 -13.69 9.11 -34.44 -0.31 -14.01 15 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -25.10 13.29 55.43 0.74 -24.36 15 13 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 15 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 17 N -0.60 -10.21 10.61 -14.58 -0.15 -10.36 15 18 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.42 6.66 8.60 -40.82 -0.35 6.31 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 249.28 15.07 3.76 3.76 Total: -1.00 -28.73 249.28 -8.16 -36.89 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -2.85 Total: -0.23 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.14 Total: -1.71 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.59 Total: -54.35 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.49 Total: 0.24 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.73 -8.16 -36.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105430.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.415 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds