Wall clock time and date at job start Sun Mar 29 2020 21:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30119 * 121.06205 * 2 1 4 4 S 1.69948 * 105.76648 * 179.97438 * 3 2 1 5 5 C 1.72303 * 94.57354 * 359.97438 * 4 3 2 6 6 N 1.38310 * 127.50266 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00447 * 0.02779 * 6 5 4 8 8 C 1.52997 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47288 * 59.99994 * 13 11 9 15 15 H 1.48503 * 109.47086 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46819 * 299.99648 * 13 11 9 17 17 N 1.31289 * 121.06212 * 180.28846 * 2 1 3 18 18 H 1.08995 * 109.47559 * 89.97531 * 1 2 3 19 19 H 1.09005 * 109.47401 * 209.97715 * 1 2 3 20 20 H 1.09007 * 109.47410 * 329.97295 * 1 2 3 21 21 H 0.97006 * 119.99798 * 180.02562 * 6 5 4 22 22 H 1.09001 * 109.47059 * 60.00042 * 7 6 5 23 23 H 1.09004 * 109.47074 * 299.99998 * 7 6 5 24 24 H 1.09001 * 109.46832 * 60.00150 * 8 7 6 25 25 H 1.09000 * 109.47611 * 300.00447 * 8 7 6 26 26 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1146 0.0000 4 16 3.8176 0.6663 0.0007 5 6 3.4971 -1.0267 0.0018 6 7 4.4185 -2.0581 0.0022 7 6 5.8527 -1.7593 0.0024 8 6 6.6462 -3.0674 0.0035 9 6 8.1216 -2.7599 0.0031 10 1 8.4593 -1.7341 0.0025 11 6 9.0401 -3.7881 0.0034 12 7 8.6287 -5.0373 0.0036 13 14 10.8688 -3.4070 0.0036 14 1 11.2104 -2.6205 1.2159 15 1 11.6390 -4.6766 0.0046 16 1 11.2107 -2.6210 -1.2091 17 7 2.1844 -1.1246 -0.0057 18 1 -0.3634 0.0004 -1.0276 19 1 -0.3634 -0.8902 0.5135 20 1 -0.3634 0.8898 0.5143 21 1 4.1151 -2.9795 0.0024 22 1 6.1034 -1.1819 0.8923 23 1 6.1037 -1.1823 -0.8877 24 1 6.3956 -3.6451 -0.8862 25 1 6.3951 -3.6440 0.8938 26 1 9.2749 -5.7607 0.0042 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105430.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:00 Heat of formation + Delta-G solvation = 19.482170 kcal Electronic energy + Delta-G solvation = -11395.423145 eV Core-core repulsion = 9213.615801 eV Total energy + Delta-G solvation = -2181.807344 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.09448 -38.01590 -35.24540 -33.22500 -31.06856 -30.47645 -26.84083 -24.37580 -23.33974 -20.91478 -19.73591 -18.68247 -17.77079 -16.81264 -16.53875 -15.98195 -15.67175 -15.03203 -14.28934 -13.79164 -13.48447 -13.33909 -12.99681 -12.70003 -12.55130 -12.52949 -12.50148 -11.79531 -11.69331 -11.44390 -10.66693 -10.60682 -10.39680 -9.16468 -8.24751 -6.35855 -0.24729 -0.00324 0.84598 1.44550 1.46157 1.53757 1.70183 1.80007 2.42365 3.11488 3.37332 4.17558 4.34863 4.38263 4.64711 4.71517 4.73344 4.83477 5.18033 5.30491 5.50239 5.53177 5.77133 6.05226 6.19735 6.76496 6.80091 7.34392 8.87047 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082153 B = 0.005618 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.746715 B = 4982.557988 C = 5297.554581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.297 3.703 3 N -0.535 5.535 4 S 0.174 5.826 5 C 0.342 3.658 6 N -0.652 5.652 7 C 0.134 3.866 8 C 0.021 3.979 9 C -0.544 4.544 10 H 0.071 0.929 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.266 1.266 15 H -0.287 1.287 16 H -0.266 1.266 17 N -0.613 5.613 18 H 0.102 0.898 19 H 0.097 0.903 20 H 0.098 0.902 21 H 0.418 0.582 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 8.255 -0.007 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.008 3.992 3 N -0.370 5.370 4 S 0.307 5.693 5 C -0.037 4.037 6 N -0.288 5.288 7 C 0.011 3.989 8 C -0.016 4.016 9 C -0.583 4.583 10 H 0.089 0.911 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.191 1.191 17 N -0.351 5.351 18 H 0.120 0.880 19 H 0.116 0.884 20 H 0.116 0.884 21 H 0.256 0.744 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.014 9.323 -0.015 13.682 hybrid contribution 0.483 -1.522 -0.007 1.597 sum -9.531 7.801 -0.022 12.316 Atomic orbital electron populations 1.20552 0.81225 1.05252 1.05261 1.23922 1.01349 0.81821 0.92110 1.77482 0.97520 1.25901 1.36125 1.84894 1.13384 0.97936 1.73063 1.25393 0.90403 0.95993 0.91897 1.44485 1.04310 1.06039 1.73990 1.21857 0.74882 1.00196 1.01932 1.19116 0.94226 0.91621 0.96676 1.21416 0.91539 0.93694 1.51633 0.91126 1.25887 1.04183 0.94773 0.94435 1.70068 1.36244 0.99599 1.50900 0.85493 0.78788 0.77473 0.79296 1.19102 1.21223 1.19093 1.67460 1.03126 1.30744 1.33797 0.88009 0.88442 0.88352 0.74351 0.90882 0.90888 0.97289 0.97276 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.42 71.24 0.74 -0.40 15 2 C 0.30 8.67 7.56 139.40 1.05 9.72 15 3 N -0.54 -16.87 12.15 -60.47 -0.73 -17.61 15 4 S 0.17 5.43 23.17 -56.49 -1.31 4.12 15 5 C 0.34 11.28 8.57 178.86 1.53 12.81 15 6 N -0.65 -21.58 5.70 -348.71 -1.99 -23.57 15 7 C 0.13 4.85 5.67 86.38 0.49 5.34 15 8 C 0.02 0.98 5.09 29.85 0.15 1.14 15 9 C -0.54 -28.04 9.11 25.60 0.23 -27.81 15 10 H 0.07 3.42 7.74 -2.91 -0.02 3.40 15 11 C 0.01 0.33 5.46 84.65 0.46 0.79 15 12 N -0.93 -52.94 13.29 21.45 0.28 -52.65 15 13 Si 0.96 41.48 29.54 68.60 2.03 43.51 15 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 15 H -0.29 -12.25 7.11 99.48 0.71 -11.54 15 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 17 N -0.61 -19.90 10.61 -200.06 -2.12 -22.02 15 18 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.10 1.60 8.14 -2.38 -0.02 1.58 15 20 H 0.10 1.53 8.14 -2.38 -0.02 1.51 15 21 H 0.42 13.35 8.60 -92.70 -0.80 12.55 15 22 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 23 H 0.07 2.56 8.14 -2.38 -0.02 2.54 15 24 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 26 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 Total: -1.00 -59.89 249.28 1.22 -58.67 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.39 Total: 7.96 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 4.67 Total: 1.59 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.56 Total: -115.85 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.31 Total: 4.12 kcal Total: -59.89 1.22 -58.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105430.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.155 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds