Wall clock time and date at job start Sun Mar 29 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99744 * 2 1 4 4 C 1.46901 * 110.99901 * 123.95195 * 2 1 3 5 5 C 1.52994 * 109.46869 * 170.00119 * 4 2 1 6 6 H 1.09002 * 110.87547 * 57.39548 * 5 4 2 7 7 C 1.55139 * 110.99365 * 293.54488 * 5 4 2 8 8 C 1.54321 * 103.02191 * 206.25861 * 7 5 4 9 9 N 1.47438 * 107.23247 * 22.28266 * 8 7 5 10 10 C 1.46895 * 111.00033 * 123.25750 * 9 8 7 11 11 C 1.50706 * 109.47182 * 69.87288 * 10 9 8 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.47850 * 108.56881 * 0.99278 * 9 8 7 20 20 H 1.09000 * 109.46752 * 296.05077 * 1 2 3 21 21 H 1.09003 * 109.46801 * 56.04547 * 1 2 3 22 22 H 1.08999 * 109.46887 * 176.04899 * 1 2 3 23 23 H 1.09000 * 109.46887 * 183.95230 * 3 2 1 24 24 H 1.09004 * 109.47387 * 303.94984 * 3 2 1 25 25 H 1.09004 * 109.47462 * 63.95481 * 3 2 1 26 26 H 1.08996 * 109.46887 * 50.00155 * 4 2 1 27 27 H 1.09005 * 109.46778 * 290.00125 * 4 2 1 28 28 H 1.08997 * 110.70669 * 87.86996 * 7 5 4 29 29 H 1.09008 * 110.85264 * 324.71231 * 7 5 4 30 30 H 1.08998 * 109.88406 * 262.87692 * 8 7 5 31 31 H 1.08994 * 109.88947 * 141.69190 * 8 7 5 32 32 H 1.09001 * 109.47613 * 309.87634 * 10 9 8 33 33 H 1.09006 * 109.47521 * 189.87251 * 10 9 8 34 34 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 35 35 H 1.08990 * 110.37480 * 94.73457 * 19 9 8 36 36 H 1.09005 * 110.37176 * 217.07515 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9704 6 1 4.0093 0.0069 0.8835 7 6 3.8192 -1.8602 -0.2498 8 6 5.1853 -2.4768 0.1178 9 7 5.3190 -2.3996 1.5841 10 6 5.5505 -3.7300 2.1623 11 6 6.9283 -4.2093 1.7840 12 1 7.5681 -3.5876 1.1752 13 6 7.3720 -5.4415 2.2150 14 7 6.5928 -6.1988 2.9559 15 14 9.0796 -6.0358 1.7454 16 1 9.0081 -6.7862 0.4659 17 1 9.9833 -4.8685 1.5849 18 1 9.6048 -6.9255 2.8122 19 6 4.0919 -1.7879 2.1372 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9164 -0.8525 25 1 1.7044 1.8724 0.9233 26 1 1.5090 -1.7406 1.1756 27 1 1.7975 -0.2246 2.0628 28 1 3.8969 -1.2662 -1.1603 29 1 3.0631 -2.6374 -0.3618 30 1 5.9870 -1.9120 -0.3579 31 1 5.2208 -3.5177 -0.2035 32 1 4.8054 -4.4274 1.7795 33 1 5.4710 -3.6732 3.2480 34 1 5.7060 -5.8903 3.1994 35 1 3.3875 -2.5609 2.4440 36 1 4.3369 -1.1407 2.9794 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:50 Heat of formation + Delta-G solvation = 0.290852 kcal Electronic energy + Delta-G solvation = -14469.094617 eV Core-core repulsion = 12180.794303 eV Total energy + Delta-G solvation = -2288.300313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.85086 -36.86206 -33.38089 -31.22084 -28.91236 -27.70877 -26.79402 -24.88286 -22.53383 -21.95285 -20.04334 -19.60328 -16.59278 -16.11537 -15.24155 -15.17486 -14.76910 -14.15792 -13.65770 -13.21677 -12.85845 -12.61171 -12.50390 -12.31830 -11.98910 -11.79773 -11.54532 -11.10741 -10.88912 -10.70197 -10.49177 -10.42859 -10.27893 -10.05245 -9.95242 -8.60459 -8.42138 -8.33625 -7.25935 -6.32668 -4.00845 3.46960 3.51482 3.67550 3.85942 4.56194 4.77731 5.00412 5.03688 5.09518 5.24439 5.34905 5.40986 5.43480 5.50668 5.61671 5.69834 5.71675 5.76137 5.87585 5.93579 6.12079 6.30979 6.34585 6.53564 6.67406 6.78868 6.93763 6.94880 6.99253 7.12567 7.85239 8.06533 8.35326 8.65099 8.92360 9.70100 11.06524 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.073304 B = 0.005798 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.878095 B = 4827.690367 C = 4952.530604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.022 3.978 4 C 0.066 3.934 5 C -0.093 4.093 6 H 0.079 0.921 7 C -0.121 4.121 8 C 0.052 3.948 9 N -0.523 5.523 10 C 0.178 3.822 11 C -0.585 4.585 12 H 0.057 0.943 13 C 0.012 3.988 14 N -0.917 5.917 15 Si 1.075 2.925 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.285 1.285 19 C 0.047 3.953 20 H 0.022 0.978 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.057 0.943 32 H -0.019 1.019 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.036 0.964 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 12.103 -5.348 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.126 4.126 4 C -0.062 4.062 5 C -0.113 4.113 6 H 0.097 0.903 7 C -0.160 4.160 8 C -0.076 4.076 9 N -0.247 5.247 10 C 0.052 3.948 11 C -0.624 4.624 12 H 0.075 0.925 13 C -0.191 4.191 14 N -0.554 5.554 15 Si 0.904 3.096 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.082 4.082 20 H 0.041 0.959 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H -0.001 1.001 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.591 10.902 -5.474 14.921 hybrid contribution -2.131 1.163 0.449 2.469 sum -10.722 12.065 -5.025 16.905 Atomic orbital electron populations 1.22373 0.87667 1.02166 1.00152 1.61960 1.07406 1.13826 1.43635 1.22431 1.01446 0.88724 1.00024 1.22124 0.95460 0.97957 0.90702 1.22307 0.93482 0.99328 0.96157 0.90267 1.22697 0.97537 0.98158 0.97564 1.22680 0.95124 1.00271 0.89568 1.63560 1.32228 1.24992 1.03922 1.20003 0.96900 0.83488 0.94380 1.22011 1.00135 1.04528 1.35708 0.92517 1.25864 1.05181 0.93522 0.94513 1.70770 1.10170 1.39281 1.35147 0.83454 0.74416 0.75568 0.76195 1.21550 1.21381 1.21065 1.22999 0.91712 0.96815 0.96679 0.95924 0.91546 0.91437 0.90852 0.91699 0.95872 0.90837 0.94878 0.91408 0.92202 0.91974 0.92410 1.00118 0.96495 0.92393 0.94613 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.57 60.07 0.57 0.82 16 2 N -0.54 -6.49 4.84 -251.25 -1.22 -7.71 16 3 C 0.02 0.23 9.34 60.06 0.56 0.79 16 4 C 0.07 0.86 4.40 -3.83 -0.02 0.84 16 5 C -0.09 -1.43 2.89 -88.48 -0.26 -1.68 16 6 H 0.08 1.19 6.54 -51.93 -0.34 0.85 16 7 C -0.12 -1.99 6.24 -24.91 -0.16 -2.15 16 8 C 0.05 1.06 6.39 -2.84 -0.02 1.04 16 9 N -0.52 -11.94 5.15 -232.69 -1.20 -13.13 16 10 C 0.18 4.81 3.61 -4.98 -0.02 4.79 16 11 C -0.59 -17.19 8.66 -34.44 -0.30 -17.49 16 12 H 0.06 1.68 7.78 -52.48 -0.41 1.27 16 13 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 14 N -0.92 -28.55 13.65 55.43 0.76 -27.79 16 15 Si 1.08 25.94 29.90 -169.99 -5.08 20.85 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.05 0.87 6.15 -2.29 -0.01 0.86 16 20 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 21 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 22 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 23 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 24 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 27 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.00 8.02 -51.92 -0.42 0.58 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.30 7.31 -51.93 -0.38 0.92 16 32 H -0.02 -0.53 7.83 -51.93 -0.41 -0.94 16 33 H 0.02 0.48 7.94 -51.93 -0.41 0.07 16 34 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 35 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -31.41 285.59 -8.58 -39.99 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -6.40 Total: -4.60 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 0.26 Total: -11.92 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -1.66 Total: -48.64 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.85 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.41 -8.58 -39.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.284 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds