Wall clock time and date at job start Sun Mar 29 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99680 * 2 1 4 4 C 1.46899 * 111.00315 * 123.95342 * 2 1 3 5 5 H 1.08998 * 109.51147 * 190.12164 * 4 2 1 6 6 C 1.52570 * 109.48954 * 70.06029 * 4 2 1 7 7 C 1.47092 * 114.32431 * 155.02475 * 6 4 2 8 8 C 1.54862 * 110.32371 * 62.80607 * 7 6 4 9 9 N 1.44580 * 109.59616 * 288.73173 * 8 7 6 10 10 C 1.36940 * 118.64060 * 270.72188 * 9 8 7 11 11 H 1.07993 * 119.99799 * 141.39233 * 10 9 8 12 12 C 1.38808 * 120.00199 * 321.40315 * 10 9 8 13 13 N 1.31617 * 120.00397 * 155.49772 * 12 10 9 14 14 Si 1.86804 * 119.99989 * 335.49048 * 12 10 9 15 15 H 1.48500 * 109.47058 * 95.19218 * 14 12 10 16 16 H 1.48504 * 109.47308 * 215.19224 * 14 12 10 17 17 H 1.48499 * 109.47006 * 335.19246 * 14 12 10 18 18 C 1.47596 * 122.71514 * 90.70472 * 9 8 7 19 19 C 1.50764 * 109.53751 * 310.24764 * 4 2 1 20 20 H 1.09002 * 109.47339 * 301.69979 * 1 2 3 21 21 H 1.08996 * 109.47198 * 61.70425 * 1 2 3 22 22 H 1.09006 * 109.46828 * 181.69907 * 1 2 3 23 23 H 1.09006 * 109.47070 * 178.40227 * 3 2 1 24 24 H 1.09002 * 109.47521 * 298.39642 * 3 2 1 25 25 H 1.08996 * 109.47385 * 58.40259 * 3 2 1 26 26 H 1.08999 * 108.50870 * 33.77264 * 6 4 2 27 27 H 1.08999 * 108.51480 * 276.28514 * 6 4 2 28 28 H 1.08997 * 109.32803 * 302.54380 * 7 6 4 29 29 H 1.09001 * 109.32534 * 183.06730 * 7 6 4 30 30 H 1.09000 * 109.45362 * 168.68935 * 8 7 6 31 31 H 1.09006 * 109.42756 * 48.75264 * 8 7 6 32 32 H 0.96994 * 120.00701 * 179.97438 * 13 12 10 33 33 H 1.09006 * 108.94898 * 78.57757 * 18 9 8 34 34 H 1.09007 * 108.94783 * 197.28986 * 18 9 8 35 35 H 1.09000 * 109.43354 * 91.68374 * 19 4 2 36 36 H 1.09001 * 109.25324 * 332.09617 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0702 -0.6035 1.2196 6 6 1.7201 -2.2511 0.9224 7 6 2.6469 -3.1479 1.6297 8 6 2.5210 -2.9527 3.1608 9 7 3.0870 -1.6760 3.5350 10 6 4.4195 -1.6143 3.8450 11 1 5.0076 -0.7640 3.5328 12 6 5.0142 -2.6446 4.5602 13 7 6.3092 -2.8554 4.4571 14 14 3.9764 -3.7320 5.6693 15 1 3.5780 -4.9565 4.9297 16 1 4.7656 -4.1126 6.8684 17 1 2.7606 -2.9912 6.0916 18 6 2.2882 -0.4364 3.5964 19 6 1.3192 -0.3130 2.4066 20 1 -0.3634 0.5400 0.8743 21 1 -0.3633 0.4871 -0.9048 22 1 -0.3633 -1.0273 0.0305 23 1 3.0847 1.3426 0.0287 24 1 1.6693 1.8858 -0.9040 25 1 1.6229 1.9036 0.8753 26 1 1.7803 -2.4631 -0.1451 27 1 0.7057 -2.4671 1.2578 28 1 3.6686 -2.9273 1.3207 29 1 2.4116 -4.1818 1.3773 30 1 3.0564 -3.7515 3.6739 31 1 1.4689 -2.9803 3.4445 32 1 6.7249 -3.5751 4.9571 33 1 1.7136 -0.4311 4.5228 34 1 2.9627 0.4199 3.5939 35 1 0.4407 -0.9317 2.5901 36 1 1.0105 0.7267 2.2980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261125621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:06 Heat of formation + Delta-G solvation = 30.392834 kcal Electronic energy + Delta-G solvation = -15417.804202 eV Core-core repulsion = 13130.809208 eV Total energy + Delta-G solvation = -2286.994993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.10655 -36.08685 -32.88397 -31.74024 -30.53151 -27.43364 -26.37333 -24.68385 -23.49345 -21.95879 -19.80741 -18.87833 -16.58749 -15.89414 -15.21434 -14.72351 -14.70539 -14.24788 -13.50796 -13.12006 -12.94689 -12.70369 -12.22852 -12.01679 -11.77509 -11.62295 -11.46466 -11.33425 -10.80867 -10.56123 -10.52916 -10.11463 -9.97679 -9.84747 -9.64228 -9.47444 -8.44480 -8.01592 -6.73518 -5.97858 -3.36829 3.34238 3.48932 3.55507 4.25803 4.55881 5.01457 5.16547 5.29949 5.37933 5.50638 5.52039 5.64192 5.71012 5.82827 5.89886 5.96687 5.98200 6.06441 6.08154 6.26898 6.38258 6.42137 6.60338 6.65770 6.72523 6.76657 6.80735 6.97754 7.20216 7.38679 7.42492 8.13112 8.41221 9.08941 9.76799 10.15070 11.17854 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046885 B = 0.009839 C = 0.009482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.066472 B = 2845.206925 C = 2952.276440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.094 3.906 5 H 0.095 0.905 6 C -0.091 4.091 7 C -0.140 4.140 8 C 0.147 3.853 9 N -0.603 5.603 10 C -0.272 4.272 11 H 0.075 0.925 12 C 0.038 3.962 13 N -0.898 5.898 14 Si 0.875 3.125 15 H -0.286 1.286 16 H -0.302 1.302 17 H -0.272 1.272 18 C 0.153 3.847 19 C -0.160 4.160 20 H 0.026 0.974 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.015 0.985 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 4.121 -6.589 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.014 4.014 5 H 0.113 0.887 6 C -0.129 4.129 7 C -0.181 4.181 8 C 0.021 3.979 9 N -0.326 5.326 10 C -0.401 4.401 11 H 0.093 0.907 12 C -0.163 4.163 13 N -0.538 5.538 14 Si 0.706 3.294 15 H -0.214 1.214 16 H -0.230 1.230 17 H -0.196 1.196 18 C 0.027 3.973 19 C -0.200 4.200 20 H 0.044 0.956 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.788 3.827 -6.970 13.402 hybrid contribution -0.820 -0.286 1.443 1.684 sum -11.607 3.541 -5.527 13.335 Atomic orbital electron populations 1.22361 0.88556 1.01782 0.99903 1.62334 1.07309 1.13453 1.43693 1.22347 1.00849 0.89261 0.99885 1.21155 1.00544 0.93302 0.86408 0.88662 1.20308 0.98739 0.93777 1.00102 1.21323 1.00687 0.97210 0.98874 1.21089 0.95575 0.88710 0.92570 1.43876 1.07455 1.02811 1.78464 1.18788 0.82926 1.08188 1.30161 0.90734 1.25456 0.94972 0.98103 0.97722 1.69900 1.10520 1.31641 1.41789 0.86969 0.80868 0.80395 0.81210 1.21357 1.22998 1.19645 1.21146 0.92651 0.90010 0.93486 1.22466 0.99654 1.00037 0.97822 0.95580 0.92321 0.91589 0.91320 0.92091 0.95693 0.92593 0.93998 0.91015 0.93257 0.93074 0.95028 0.92772 0.96658 0.92688 0.92782 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.86 60.06 0.53 0.82 16 2 N -0.55 -8.11 4.87 -244.82 -1.19 -9.30 16 3 C 0.02 0.33 9.34 60.06 0.56 0.89 16 4 C 0.09 1.59 1.80 -69.05 -0.12 1.47 16 5 H 0.10 1.93 7.25 -51.93 -0.38 1.55 16 6 C -0.09 -1.55 3.97 -29.79 -0.12 -1.67 16 7 C -0.14 -2.74 5.74 -28.58 -0.16 -2.91 16 8 C 0.15 3.25 4.52 -4.09 -0.02 3.23 16 9 N -0.60 -14.28 1.83 -172.09 -0.32 -14.60 16 10 C -0.27 -7.56 9.68 -15.06 -0.15 -7.70 16 11 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 12 C 0.04 1.10 5.22 -17.43 -0.09 1.01 16 13 N -0.90 -27.36 13.97 55.49 0.78 -26.58 16 14 Si 0.88 22.42 25.25 -169.99 -4.29 18.13 16 15 H -0.29 -7.11 6.66 56.52 0.38 -6.74 16 16 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 17 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.15 3.08 6.25 -2.95 -0.02 3.06 16 19 C -0.16 -2.66 3.88 -27.36 -0.11 -2.77 16 20 H 0.03 0.32 6.61 -51.93 -0.34 -0.02 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.83 6.96 -51.93 -0.36 0.47 16 23 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.32 6.79 -51.93 -0.35 -0.03 16 26 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 27 H 0.04 0.67 6.87 -51.93 -0.36 0.31 16 28 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.25 3.35 -51.93 -0.17 1.07 16 31 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 1.12 7.89 -51.92 -0.41 0.71 16 35 H 0.05 0.88 7.31 -51.93 -0.38 0.50 16 36 H 0.06 0.86 5.55 -51.93 -0.29 0.57 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -29.44 265.78 -6.70 -36.14 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.99 Total: -3.23 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 0.31 Total: -4.57 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.73 Total: -50.48 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.29 Total: 18.13 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.44 -6.70 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.531 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds