Wall clock time and date at job start Sun Mar 29 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99680 * 2 1 4 4 C 1.46899 * 111.00315 * 123.95342 * 2 1 3 5 5 H 1.08998 * 109.51147 * 190.12164 * 4 2 1 6 6 C 1.52570 * 109.48954 * 70.06029 * 4 2 1 7 7 C 1.47092 * 114.32431 * 155.02475 * 6 4 2 8 8 C 1.54862 * 110.32371 * 62.80607 * 7 6 4 9 9 N 1.44580 * 109.59616 * 288.73173 * 8 7 6 10 10 C 1.36940 * 118.64060 * 270.72188 * 9 8 7 11 11 H 1.07993 * 119.99799 * 141.39233 * 10 9 8 12 12 C 1.38808 * 120.00199 * 321.40315 * 10 9 8 13 13 N 1.31617 * 120.00397 * 155.49772 * 12 10 9 14 14 Si 1.86804 * 119.99989 * 335.49048 * 12 10 9 15 15 H 1.48500 * 109.47058 * 95.19218 * 14 12 10 16 16 H 1.48504 * 109.47308 * 215.19224 * 14 12 10 17 17 H 1.48499 * 109.47006 * 335.19246 * 14 12 10 18 18 C 1.47596 * 122.71514 * 90.70472 * 9 8 7 19 19 C 1.50764 * 109.53751 * 310.24764 * 4 2 1 20 20 H 1.09002 * 109.47339 * 301.69979 * 1 2 3 21 21 H 1.08996 * 109.47198 * 61.70425 * 1 2 3 22 22 H 1.09006 * 109.46828 * 181.69907 * 1 2 3 23 23 H 1.09006 * 109.47070 * 178.40227 * 3 2 1 24 24 H 1.09002 * 109.47521 * 298.39642 * 3 2 1 25 25 H 1.08996 * 109.47385 * 58.40259 * 3 2 1 26 26 H 1.08999 * 108.50870 * 33.77264 * 6 4 2 27 27 H 1.08999 * 108.51480 * 276.28514 * 6 4 2 28 28 H 1.08997 * 109.32803 * 302.54380 * 7 6 4 29 29 H 1.09001 * 109.32534 * 183.06730 * 7 6 4 30 30 H 1.09000 * 109.45362 * 168.68935 * 8 7 6 31 31 H 1.09006 * 109.42756 * 48.75264 * 8 7 6 32 32 H 0.96994 * 120.00701 * 179.97438 * 13 12 10 33 33 H 1.09006 * 108.94898 * 78.57757 * 18 9 8 34 34 H 1.09007 * 108.94783 * 197.28986 * 18 9 8 35 35 H 1.09000 * 109.43354 * 91.68374 * 19 4 2 36 36 H 1.09001 * 109.25324 * 332.09617 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0702 -0.6035 1.2196 6 6 1.7201 -2.2511 0.9224 7 6 2.6469 -3.1479 1.6297 8 6 2.5210 -2.9527 3.1608 9 7 3.0870 -1.6760 3.5350 10 6 4.4195 -1.6143 3.8450 11 1 5.0076 -0.7640 3.5328 12 6 5.0142 -2.6446 4.5602 13 7 6.3092 -2.8554 4.4571 14 14 3.9764 -3.7320 5.6693 15 1 3.5780 -4.9565 4.9297 16 1 4.7656 -4.1126 6.8684 17 1 2.7606 -2.9912 6.0916 18 6 2.2882 -0.4364 3.5964 19 6 1.3192 -0.3130 2.4066 20 1 -0.3634 0.5400 0.8743 21 1 -0.3633 0.4871 -0.9048 22 1 -0.3633 -1.0273 0.0305 23 1 3.0847 1.3426 0.0287 24 1 1.6693 1.8858 -0.9040 25 1 1.6229 1.9036 0.8753 26 1 1.7803 -2.4631 -0.1451 27 1 0.7057 -2.4671 1.2578 28 1 3.6686 -2.9273 1.3207 29 1 2.4116 -4.1818 1.3773 30 1 3.0564 -3.7515 3.6739 31 1 1.4689 -2.9803 3.4445 32 1 6.7249 -3.5751 4.9571 33 1 1.7136 -0.4311 4.5228 34 1 2.9627 0.4199 3.5939 35 1 0.4407 -0.9317 2.5901 36 1 1.0105 0.7267 2.2980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261125621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:06 Heat of formation + Delta-G solvation = 10.634705 kcal Electronic energy + Delta-G solvation = -15418.660979 eV Core-core repulsion = 13130.809208 eV Total energy + Delta-G solvation = -2287.851770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50865 -37.65348 -34.63884 -33.53224 -32.19305 -28.49935 -28.02281 -26.19228 -25.28937 -23.36065 -21.51634 -20.26833 -18.60481 -17.59685 -16.70518 -16.41340 -15.91796 -15.54201 -15.05350 -14.84807 -14.70158 -14.35883 -13.79351 -13.44575 -13.14423 -13.08781 -12.83934 -12.51867 -12.50556 -12.40352 -12.06301 -11.81955 -11.63879 -11.38642 -11.34663 -11.23062 -10.57821 -9.16353 -8.69671 -8.20370 -5.55828 1.30533 1.40539 1.52152 2.42506 3.04131 3.10300 3.38967 3.80024 4.09437 4.25240 4.31118 4.35739 4.44139 4.47892 4.59774 4.68647 4.71154 4.78404 4.81473 4.95533 5.01823 5.06900 5.07260 5.13655 5.20441 5.28926 5.36631 5.46969 5.60638 5.97670 6.17084 6.21096 6.27115 7.06041 7.69343 8.05289 8.99719 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046885 B = 0.009839 C = 0.009482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.066472 B = 2845.206925 C = 2952.276440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.554 5.554 3 C 0.025 3.975 4 C 0.100 3.900 5 H 0.053 0.947 6 C -0.087 4.087 7 C -0.131 4.131 8 C 0.139 3.861 9 N -0.611 5.611 10 C -0.260 4.260 11 H 0.035 0.965 12 C -0.017 4.017 13 N -0.946 5.946 14 Si 0.942 3.058 15 H -0.272 1.272 16 H -0.308 1.308 17 H -0.263 1.263 18 C 0.149 3.851 19 C -0.145 4.145 20 H 0.032 0.968 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.023 0.977 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 3.971 -7.109 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.277 5.277 3 C -0.123 4.123 4 C -0.009 4.009 5 H 0.071 0.929 6 C -0.125 4.125 7 C -0.172 4.172 8 C 0.014 3.986 9 N -0.335 5.335 10 C -0.390 4.390 11 H 0.052 0.948 12 C -0.214 4.214 13 N -0.590 5.590 14 Si 0.771 3.229 15 H -0.199 1.199 16 H -0.236 1.236 17 H -0.188 1.188 18 C 0.024 3.976 19 C -0.185 4.185 20 H 0.050 0.950 21 H 0.095 0.905 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.013 3.689 -7.508 16.320 hybrid contribution 0.188 -0.141 1.514 1.532 sum -13.825 3.549 -5.994 15.480 Atomic orbital electron populations 1.22444 0.86583 1.02427 1.01150 1.62311 1.09054 1.14033 1.42314 1.22377 0.99941 0.88787 1.01218 1.20927 0.98272 0.93992 0.87669 0.92904 1.20236 0.98984 0.93068 1.00234 1.21217 0.99301 0.99304 0.97334 1.21209 0.96458 0.87030 0.93930 1.43966 1.06271 1.04622 1.78663 1.18655 0.84774 1.06597 1.29011 0.94757 1.26052 0.95946 1.00197 0.99203 1.70024 1.12461 1.33173 1.43327 0.85884 0.79121 0.79137 0.78766 1.19939 1.23620 1.18788 1.21258 0.92779 0.87922 0.95621 1.22329 0.98796 1.01615 0.95723 0.94982 0.90471 0.91207 0.92978 0.89814 0.95261 0.91824 0.91704 0.94758 0.91049 0.95320 0.92274 0.92847 0.95897 0.94059 0.91180 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.86 127.69 1.13 1.59 16 2 N -0.55 -15.06 4.87 -928.46 -4.52 -19.59 16 3 C 0.02 0.61 9.34 127.69 1.19 1.80 16 4 C 0.10 3.24 1.80 44.05 0.08 3.32 16 5 H 0.05 2.17 7.25 -2.39 -0.02 2.16 16 6 C -0.09 -2.75 3.97 28.61 0.11 -2.63 16 7 C -0.13 -4.94 5.74 29.39 0.17 -4.77 16 8 C 0.14 5.91 4.52 87.37 0.39 6.30 16 9 N -0.61 -28.79 1.83 -698.38 -1.28 -30.07 16 10 C -0.26 -14.92 9.68 84.03 0.81 -14.11 16 11 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 12 C -0.02 -1.02 5.22 84.86 0.44 -0.58 16 13 N -0.95 -59.69 13.97 21.65 0.30 -59.38 16 14 Si 0.94 46.71 25.25 68.60 1.73 48.44 16 15 H -0.27 -12.81 6.66 99.48 0.66 -12.15 16 16 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 17 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 18 C 0.15 5.85 6.25 86.49 0.54 6.39 16 19 C -0.14 -4.42 3.88 30.19 0.12 -4.30 16 20 H 0.03 0.65 6.61 -2.39 -0.02 0.63 16 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.07 1.43 6.96 -2.38 -0.02 1.42 16 23 H 0.05 1.43 7.98 -2.38 -0.02 1.41 16 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.03 0.69 6.79 -2.39 -0.02 0.67 16 26 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 27 H 0.06 1.78 6.87 -2.39 -0.02 1.76 16 28 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.03 1.35 3.35 -2.39 -0.01 1.34 16 31 H 0.06 2.19 8.06 -2.38 -0.02 2.17 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.04 1.70 7.89 -2.38 -0.02 1.68 16 35 H 0.07 1.96 7.31 -2.39 -0.02 1.95 16 36 H 0.07 2.04 5.55 -2.39 -0.01 2.02 16 Total: -1.00 -64.64 265.78 2.21 -62.43 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.99 Total: 5.17 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.99 Total: -6.99 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -5.50 Total: -109.04 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.73 Total: 48.44 kcal Total: -64.64 2.21 -62.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.063 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds