Wall clock time and date at job start Sun Mar 29 2020 21:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30129 * 121.05859 * 2 1 4 4 S 1.69950 * 105.75999 * 179.97438 * 3 2 1 5 5 C 1.72303 * 94.57779 * 0.02562 * 4 3 2 6 6 N 1.38314 * 127.50679 * 180.02562 * 5 4 3 7 7 C 1.46501 * 119.99472 * 359.97332 * 6 5 4 8 8 H 1.08990 * 109.47827 * 34.99817 * 7 6 5 9 9 C 1.53009 * 109.47008 * 274.99639 * 7 6 5 10 10 C 1.50706 * 109.46826 * 155.00560 * 7 6 5 11 11 H 1.07993 * 120.00055 * 5.45174 * 10 7 6 12 12 C 1.37881 * 119.99699 * 185.45784 * 10 7 6 13 13 N 1.31513 * 119.99937 * 9.55576 * 12 10 7 14 14 Si 1.86798 * 119.99706 * 189.55492 * 12 10 7 15 15 H 1.48501 * 109.47231 * 84.99652 * 14 12 10 16 16 H 1.48499 * 109.46968 * 204.99564 * 14 12 10 17 17 H 1.48505 * 109.47371 * 324.99391 * 14 12 10 18 18 N 1.31289 * 121.06096 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.47096 * 90.02381 * 1 2 3 20 20 H 1.09004 * 109.46912 * 210.02087 * 1 2 3 21 21 H 1.08998 * 109.47182 * 330.02842 * 1 2 3 22 22 H 0.96995 * 120.00522 * 179.97438 * 6 5 4 23 23 H 1.08998 * 109.46618 * 63.67371 * 9 7 6 24 24 H 1.08998 * 109.47263 * 183.66823 * 9 7 6 25 25 H 1.08999 * 109.46939 * 303.67420 * 9 7 6 26 26 H 0.97006 * 119.99573 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6663 0.0007 5 6 3.4972 -1.0266 0.0002 6 7 4.4186 -2.0582 0.0010 7 6 5.8527 -1.7591 0.0018 8 1 6.0364 -0.8608 0.5910 9 6 6.3272 -1.5323 -1.4351 10 6 6.6070 -2.9172 0.6028 11 1 6.0829 -3.8234 0.8684 12 6 7.9660 -2.8197 0.8138 13 7 8.5724 -1.6617 0.6694 14 14 8.9459 -4.3324 1.3045 15 1 9.3330 -5.0882 0.0863 16 1 10.1682 -3.9143 2.0369 17 1 8.1155 -5.1974 2.1807 18 7 2.1844 -1.1246 0.0005 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 4.1153 -2.9795 0.0010 23 1 5.8293 -0.6550 -1.8478 24 1 7.4057 -1.3743 -1.4410 25 1 6.0846 -2.4060 -2.0400 26 1 9.5287 -1.5932 0.8175 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132225.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:03 Heat of formation + Delta-G solvation = 40.461556 kcal Electronic energy + Delta-G solvation = -11842.169709 eV Core-core repulsion = 9661.272099 eV Total energy + Delta-G solvation = -2180.897610 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.49703 -36.47840 -33.18464 -31.29649 -29.23511 -28.76131 -25.51432 -23.21933 -21.12629 -19.66386 -18.04124 -16.89560 -15.90323 -15.13506 -15.01235 -13.97442 -13.59694 -13.00731 -12.77243 -12.39012 -12.17374 -11.50634 -11.22026 -11.16067 -10.94435 -10.89669 -10.70816 -10.42761 -10.21391 -9.40641 -9.03544 -8.85788 -8.65459 -7.37898 -6.37214 -4.44223 1.40947 1.68257 2.45075 3.15187 3.22255 3.23396 3.26011 3.60094 4.20878 4.88140 4.97941 5.51011 5.67111 5.82403 6.18254 6.34158 6.44925 6.60159 6.64530 6.93910 7.34820 7.41091 7.61378 7.72785 8.14211 8.36967 8.61962 9.22527 10.71291 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.065944 B = 0.007526 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.497566 B = 3719.787854 C = 3929.989136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.300 3.700 3 N -0.533 5.533 4 S 0.166 5.834 5 C 0.356 3.644 6 N -0.635 5.635 7 C 0.260 3.740 8 H 0.057 0.943 9 C -0.150 4.150 10 C -0.542 4.542 11 H 0.067 0.933 12 C 0.073 3.927 13 N -0.879 5.879 14 Si 0.905 3.095 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.272 1.272 18 N -0.614 5.614 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.407 0.593 23 H 0.022 0.978 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 0.894 -1.735 8.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.010 3.990 3 N -0.369 5.369 4 S 0.300 5.700 5 C -0.024 4.024 6 N -0.268 5.268 7 C 0.159 3.841 8 H 0.074 0.926 9 C -0.209 4.209 10 C -0.580 4.580 11 H 0.085 0.915 12 C -0.132 4.132 13 N -0.515 5.515 14 Si 0.732 3.268 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.353 5.353 19 H 0.099 0.901 20 H 0.101 0.899 21 H 0.098 0.902 22 H 0.244 0.756 23 H 0.041 0.959 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.080 2.224 -1.712 7.616 hybrid contribution 0.099 -2.018 0.229 2.033 sum -6.981 0.207 -1.482 7.140 Atomic orbital electron populations 1.20285 0.85010 1.03589 1.03386 1.23041 0.99217 0.82914 0.93798 1.77378 0.98159 1.25478 1.35856 1.85050 1.12072 0.99153 1.73765 1.25370 0.89961 0.95969 0.91055 1.45210 1.05547 1.04998 1.71053 1.19250 0.71511 0.99045 0.94336 0.92551 1.22158 1.03297 0.98175 0.97315 1.21005 0.93102 0.99978 1.43919 0.91454 1.24868 0.97461 0.96464 0.94439 1.69945 1.10902 1.23161 1.47473 0.86399 0.79363 0.82336 0.78739 1.20192 1.20952 1.19718 1.67402 1.03242 1.29710 1.34994 0.90110 0.89885 0.90170 0.75575 0.95909 0.89825 0.94248 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.42 36.01 0.38 -0.39 15 2 C 0.30 5.41 7.56 -159.03 -1.20 4.20 15 3 N -0.53 -10.30 12.15 29.54 0.36 -9.94 15 4 S 0.17 3.30 22.72 -107.50 -2.44 0.86 15 5 C 0.36 7.25 8.54 -86.35 -0.74 6.51 15 6 N -0.64 -13.00 5.21 -56.19 -0.29 -13.29 15 7 C 0.26 5.96 2.46 -69.07 -0.17 5.79 15 8 H 0.06 1.42 7.38 -51.93 -0.38 1.04 15 9 C -0.15 -3.27 9.37 37.16 0.35 -2.93 15 10 C -0.54 -13.41 8.66 -34.44 -0.30 -13.71 15 11 H 0.07 1.62 7.74 -52.49 -0.41 1.22 15 12 C 0.07 1.83 5.17 -17.82 -0.09 1.74 15 13 N -0.88 -23.04 12.16 55.43 0.67 -22.36 15 14 Si 0.90 19.59 29.55 -169.99 -5.02 14.57 15 15 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 18 N -0.61 -12.01 10.61 -14.58 -0.15 -12.17 15 19 H 0.08 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.41 7.75 8.65 -40.82 -0.35 7.40 15 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 24 H 0.08 1.97 6.83 -51.93 -0.35 1.61 15 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 15 LS Contribution 245.51 15.07 3.70 3.70 Total: -1.00 -26.94 245.51 -7.70 -34.64 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.75 Total: 2.78 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.78 Total: 1.22 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.59 Total: -57.76 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.44 Total: 0.86 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.94 -7.70 -34.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132225.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.100 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds