Wall clock time and date at job start Sun Mar 29 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30132 * 121.05837 * 2 1 4 4 S 1.69955 * 105.76069 * 179.75956 * 3 2 1 5 5 C 1.72301 * 94.57431 * 0.34662 * 4 3 2 6 6 N 1.38314 * 127.50332 * 179.91820 * 5 4 3 7 7 C 1.46506 * 120.00028 * 359.68284 * 6 5 4 8 8 H 1.09005 * 109.46722 * 324.72491 * 7 6 5 9 9 C 1.52995 * 109.47182 * 84.72364 * 7 6 5 10 10 C 1.50694 * 109.46946 * 204.72699 * 7 6 5 11 11 H 1.08001 * 120.00329 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99654 * 180.02562 * 10 7 6 13 13 N 1.31508 * 120.00407 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99962 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47059 * 59.99975 * 14 12 10 16 16 H 1.48496 * 109.47534 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47329 * 300.00055 * 14 12 10 18 18 N 1.31285 * 121.06452 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.46915 * 269.97493 * 1 2 3 20 20 H 1.09001 * 109.47649 * 29.97346 * 1 2 3 21 21 H 1.08997 * 109.47302 * 149.97804 * 1 2 3 22 22 H 0.97005 * 120.00102 * 179.40522 * 6 5 4 23 23 H 1.09007 * 109.47360 * 299.99766 * 9 7 6 24 24 H 1.08997 * 109.47379 * 60.00113 * 9 7 6 25 25 H 1.09002 * 109.47097 * 180.02562 * 9 7 6 26 26 H 0.97000 * 120.00744 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1148 0.0000 4 16 3.8176 0.6664 0.0069 5 6 3.4971 -1.0265 -0.0010 6 7 4.4185 -2.0580 -0.0016 7 6 5.8528 -1.7591 -0.0020 8 1 6.0370 -0.8635 -0.5954 9 6 6.3254 -1.5255 1.4342 10 6 6.6076 -2.9198 -0.5968 11 1 6.0726 -3.7931 -0.9399 12 6 7.9813 -2.8674 -0.7022 13 7 8.6329 -1.8043 -0.2840 14 14 8.9172 -4.3065 -1.4389 15 1 8.4588 -4.5333 -2.8331 16 1 10.3709 -4.0035 -1.4394 17 1 8.6657 -5.5265 -0.6304 18 7 2.1844 -1.1246 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5142 22 1 4.1152 -2.9794 0.0024 23 1 5.7795 -0.6859 1.8645 24 1 6.1412 -2.4211 2.0276 25 1 7.3924 -1.3027 1.4339 26 1 9.5993 -1.7672 -0.3585 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132228.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:05 Heat of formation + Delta-G solvation = 41.756839 kcal Electronic energy + Delta-G solvation = -11848.385630 eV Core-core repulsion = 9667.544188 eV Total energy + Delta-G solvation = -2180.841442 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.49870 -36.48186 -33.22173 -31.27044 -29.23673 -28.66603 -25.54597 -23.21021 -21.08737 -19.66330 -18.04262 -16.88769 -15.92171 -15.13289 -15.02578 -13.97881 -13.60278 -12.99102 -12.77671 -12.39535 -12.10981 -11.40865 -11.23738 -11.16781 -10.98613 -10.89659 -10.58998 -10.40047 -10.23156 -9.37164 -9.03473 -8.86558 -8.66824 -7.37383 -6.34815 -4.45633 1.40840 1.68025 2.44901 3.16019 3.21536 3.22241 3.25799 3.60051 4.20407 4.88166 4.98895 5.50796 5.67014 5.82277 6.18045 6.35887 6.48177 6.65926 6.70718 7.00133 7.38917 7.46557 7.60760 7.83928 8.14244 8.36687 8.61099 9.22523 10.71337 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.065586 B = 0.007521 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.818163 B = 3721.926053 C = 3938.856120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.301 3.699 3 N -0.533 5.533 4 S 0.165 5.835 5 C 0.356 3.644 6 N -0.635 5.635 7 C 0.262 3.738 8 H 0.050 0.950 9 C -0.156 4.156 10 C -0.540 4.540 11 H 0.067 0.933 12 C 0.071 3.929 13 N -0.882 5.882 14 Si 0.908 3.092 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.614 5.614 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.407 0.593 23 H 0.017 0.983 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 1.112 0.992 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.011 3.989 3 N -0.369 5.369 4 S 0.298 5.702 5 C -0.023 4.023 6 N -0.268 5.268 7 C 0.161 3.839 8 H 0.068 0.932 9 C -0.215 4.215 10 C -0.578 4.578 11 H 0.085 0.915 12 C -0.134 4.134 13 N -0.518 5.518 14 Si 0.735 3.265 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.200 1.200 18 N -0.354 5.354 19 H 0.099 0.901 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.244 0.756 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.063 2.427 1.006 7.536 hybrid contribution 0.034 -1.992 -0.345 2.022 sum -7.029 0.435 0.661 7.073 Atomic orbital electron populations 1.20281 0.85010 1.03585 1.03395 1.23038 0.99215 0.82917 0.93776 1.77382 0.98132 1.25467 1.35900 1.85035 1.12131 0.99189 1.73812 1.25364 0.89958 0.95967 0.91057 1.45245 1.05575 1.05009 1.70980 1.19236 0.71437 0.98512 0.94716 0.93249 1.22229 1.04528 0.98099 0.96653 1.21017 0.91860 1.02336 1.42581 0.91512 1.24862 0.97210 0.96518 0.94769 1.69843 1.08913 1.27894 1.45160 0.86384 0.78538 0.81830 0.79722 1.19965 1.20920 1.19951 1.67399 1.03238 1.29708 1.35022 0.90100 0.90170 0.89890 0.75560 0.96378 0.94462 0.88137 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.42 36.00 0.37 -0.39 15 2 C 0.30 5.41 7.56 -159.04 -1.20 4.21 15 3 N -0.53 -10.30 12.15 29.54 0.36 -9.94 15 4 S 0.17 3.27 22.73 -107.50 -2.44 0.83 15 5 C 0.36 7.26 8.54 -86.36 -0.74 6.52 15 6 N -0.64 -13.05 5.21 -56.19 -0.29 -13.34 15 7 C 0.26 6.04 2.59 -69.08 -0.18 5.86 15 8 H 0.05 1.24 7.45 -51.93 -0.39 0.85 15 9 C -0.16 -3.48 9.27 37.16 0.34 -3.14 15 10 C -0.54 -13.36 8.73 -34.44 -0.30 -13.67 15 11 H 0.07 1.61 7.74 -52.49 -0.41 1.20 15 12 C 0.07 1.78 5.30 -17.82 -0.09 1.68 15 13 N -0.88 -22.90 11.32 55.43 0.63 -22.28 15 14 Si 0.91 19.60 29.54 -169.99 -5.02 14.58 15 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 17 H -0.27 -5.86 7.11 56.52 0.40 -5.45 15 18 N -0.61 -12.03 10.61 -14.58 -0.15 -12.19 15 19 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.08 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.41 7.80 8.66 -40.82 -0.35 7.45 15 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.10 2.44 6.07 -51.93 -0.32 2.12 15 26 H 0.27 6.68 8.31 -40.82 -0.34 6.34 15 LS Contribution 244.22 15.07 3.68 3.68 Total: -1.00 -26.75 244.22 -7.75 -34.50 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.71 Total: 3.06 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.79 Total: 1.08 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.54 Total: -57.74 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.44 Total: 0.83 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.75 -7.75 -34.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132228.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.261 kcal (2) G-P(sol) polarization free energy of solvation -26.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds