Wall clock time and date at job start Sun Mar 29 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30132 * 121.05837 * 2 1 4 4 S 1.69955 * 105.76069 * 179.75956 * 3 2 1 5 5 C 1.72301 * 94.57431 * 0.34662 * 4 3 2 6 6 N 1.38314 * 127.50332 * 179.91820 * 5 4 3 7 7 C 1.46506 * 120.00028 * 359.68284 * 6 5 4 8 8 H 1.09005 * 109.46722 * 324.72491 * 7 6 5 9 9 C 1.52995 * 109.47182 * 84.72364 * 7 6 5 10 10 C 1.50694 * 109.46946 * 204.72699 * 7 6 5 11 11 H 1.08001 * 120.00329 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99654 * 180.02562 * 10 7 6 13 13 N 1.31508 * 120.00407 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99962 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47059 * 59.99975 * 14 12 10 16 16 H 1.48496 * 109.47534 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47329 * 300.00055 * 14 12 10 18 18 N 1.31285 * 121.06452 * 180.02562 * 2 1 3 19 19 H 1.08999 * 109.46915 * 269.97493 * 1 2 3 20 20 H 1.09001 * 109.47649 * 29.97346 * 1 2 3 21 21 H 1.08997 * 109.47302 * 149.97804 * 1 2 3 22 22 H 0.97005 * 120.00102 * 179.40522 * 6 5 4 23 23 H 1.09007 * 109.47360 * 299.99766 * 9 7 6 24 24 H 1.08997 * 109.47379 * 60.00113 * 9 7 6 25 25 H 1.09002 * 109.47097 * 180.02562 * 9 7 6 26 26 H 0.97000 * 120.00744 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1148 0.0000 4 16 3.8176 0.6664 0.0069 5 6 3.4971 -1.0265 -0.0010 6 7 4.4185 -2.0580 -0.0016 7 6 5.8528 -1.7591 -0.0020 8 1 6.0370 -0.8635 -0.5954 9 6 6.3254 -1.5255 1.4342 10 6 6.6076 -2.9198 -0.5968 11 1 6.0726 -3.7931 -0.9399 12 6 7.9813 -2.8674 -0.7022 13 7 8.6329 -1.8043 -0.2840 14 14 8.9172 -4.3065 -1.4389 15 1 8.4588 -4.5333 -2.8331 16 1 10.3709 -4.0035 -1.4394 17 1 8.6657 -5.5265 -0.6304 18 7 2.1844 -1.1246 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5142 22 1 4.1152 -2.9794 0.0024 23 1 5.7795 -0.6859 1.8645 24 1 6.1412 -2.4211 2.0276 25 1 7.3924 -1.3027 1.4339 26 1 9.5993 -1.7672 -0.3585 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261132228.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:05 Heat of formation + Delta-G solvation = 25.656596 kcal Electronic energy + Delta-G solvation = -11849.083789 eV Core-core repulsion = 9667.544188 eV Total energy + Delta-G solvation = -2181.539601 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.99464 -38.18515 -35.00186 -32.87794 -30.53915 -30.28831 -27.43645 -24.76571 -22.85152 -21.16290 -19.59581 -18.65489 -17.59884 -16.93373 -16.51711 -15.62769 -15.02199 -14.67125 -14.35085 -13.62300 -13.42616 -13.07048 -12.97301 -12.78311 -12.60810 -12.43672 -12.34414 -12.16286 -11.87244 -11.21945 -10.64860 -10.57977 -10.34354 -8.98866 -8.24801 -6.41806 -0.13687 0.11431 0.95618 1.46617 1.46829 1.54676 1.78529 2.00186 2.42158 3.07165 3.48226 4.39560 4.52536 4.71500 4.75421 4.82657 4.88218 4.92841 5.16007 5.31016 5.52592 5.64422 5.84917 6.00677 6.44622 6.65031 6.90444 7.29893 8.80842 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.065586 B = 0.007521 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.818163 B = 3721.926053 C = 3938.856120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.296 3.704 3 N -0.541 5.541 4 S 0.147 5.853 5 C 0.349 3.651 6 N -0.635 5.635 7 C 0.270 3.730 8 H 0.026 0.974 9 C -0.145 4.145 10 C -0.555 4.555 11 H 0.071 0.929 12 C 0.027 3.973 13 N -0.907 5.907 14 Si 0.969 3.031 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.268 1.268 18 N -0.617 5.617 19 H 0.102 0.898 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.414 0.586 23 H 0.027 0.973 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 0.468 0.894 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.006 3.994 3 N -0.376 5.376 4 S 0.281 5.719 5 C -0.031 4.031 6 N -0.269 5.269 7 C 0.168 3.832 8 H 0.044 0.956 9 C -0.204 4.204 10 C -0.593 4.593 11 H 0.089 0.911 12 C -0.175 4.175 13 N -0.544 5.544 14 Si 0.794 3.206 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.193 1.193 18 N -0.357 5.357 19 H 0.120 0.880 20 H 0.115 0.885 21 H 0.116 0.884 22 H 0.252 0.748 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.211 1.787 0.911 8.452 hybrid contribution 0.278 -1.740 -0.312 1.790 sum -7.932 0.047 0.599 7.955 Atomic orbital electron populations 1.20531 0.81112 1.05164 1.05219 1.23986 1.01369 0.82005 0.92011 1.77468 0.97411 1.25957 1.36803 1.85081 1.13417 0.99333 1.74118 1.25481 0.90411 0.95956 0.91259 1.44933 1.04767 1.05421 1.71743 1.18947 0.72645 0.97122 0.94488 0.95587 1.22062 1.03268 0.98584 0.96474 1.21330 0.92375 1.02887 1.42682 0.91128 1.25614 0.98052 0.98697 0.95105 1.69955 1.09096 1.29404 1.45994 0.85435 0.77163 0.79111 0.78903 1.19807 1.20843 1.19288 1.67500 1.02768 1.30495 1.34900 0.87973 0.88472 0.88412 0.74813 0.95416 0.94076 0.90118 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 10.42 71.23 0.74 -0.55 15 2 C 0.30 10.04 7.56 139.39 1.05 11.10 15 3 N -0.54 -20.15 12.15 -60.45 -0.73 -20.88 15 4 S 0.15 5.80 22.73 -56.49 -1.28 4.52 15 5 C 0.35 13.96 8.54 178.86 1.53 15.49 15 6 N -0.63 -25.78 5.21 -331.70 -1.73 -27.50 15 7 C 0.27 12.48 2.59 44.24 0.11 12.60 15 8 H 0.03 1.34 7.45 -2.38 -0.02 1.32 15 9 C -0.14 -6.46 9.27 71.98 0.67 -5.80 15 10 C -0.55 -27.30 8.73 25.60 0.22 -27.08 15 11 H 0.07 3.34 7.74 -2.91 -0.02 3.32 15 12 C 0.03 1.35 5.30 84.66 0.45 1.80 15 13 N -0.91 -47.37 11.32 21.45 0.24 -47.12 15 14 Si 0.97 39.69 29.54 68.60 2.03 41.72 15 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 16 H -0.28 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 18 N -0.62 -23.22 10.61 -200.03 -2.12 -25.34 15 19 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.10 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.41 15.54 8.66 -92.70 -0.80 14.74 15 23 H 0.03 1.14 8.14 -2.38 -0.02 1.12 15 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.08 3.96 6.07 -2.39 -0.01 3.94 15 26 H 0.27 13.43 8.31 -92.71 -0.77 12.66 15 Total: -1.00 -55.29 244.22 1.57 -53.71 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.40 Total: 13.34 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 4.78 Total: 7.56 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -4.34 Total: -120.85 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.28 Total: 4.52 kcal Total: -55.29 1.57 -53.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132228.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.371 kcal (2) G-P(sol) polarization free energy of solvation -55.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds