Wall clock time and date at job start Sun Mar 29 2020 21:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46765 * 124.35132 * 2 1 4 4 C 1.54479 * 105.47599 * 197.04031 * 3 2 1 5 5 H 1.09005 * 111.00021 * 92.71601 * 4 3 2 6 6 C 1.50703 * 110.96815 * 216.46238 * 4 3 2 7 7 O 1.21213 * 119.99683 * 353.83118 * 6 4 3 8 8 O 1.34304 * 119.99842 * 173.83378 * 6 4 3 9 9 C 1.34921 * 117.00180 * 180.02562 * 8 6 4 10 10 H 1.08004 * 119.99263 * 359.97438 * 9 8 6 11 11 C 1.38745 * 120.00380 * 179.97438 * 9 8 6 12 12 N 1.31449 * 120.00198 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99963 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47174 * 270.00262 * 13 11 9 15 15 H 1.48494 * 109.46800 * 30.00310 * 13 11 9 16 16 H 1.48504 * 109.46913 * 150.00012 * 13 11 9 17 17 C 1.54623 * 101.76524 * 334.58248 * 4 3 2 18 18 C 1.34419 * 124.35346 * 180.02562 * 2 1 3 19 19 O 1.21285 * 124.93926 * 359.60277 * 18 2 1 20 20 H 1.09007 * 109.47226 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47240 * 299.99583 * 1 2 3 22 22 H 1.08993 * 109.47494 * 60.00256 * 1 2 3 23 23 H 1.08998 * 110.24541 * 78.03535 * 3 2 1 24 24 H 1.09007 * 110.23966 * 316.04219 * 3 2 1 25 25 H 0.97001 * 119.99860 * 179.97438 * 12 11 9 26 26 H 1.08997 * 110.48852 * 143.47682 * 17 4 3 27 27 H 1.09003 * 110.48668 * 266.12291 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7488 -0.4363 5 1 3.8270 0.8452 -1.5147 6 6 4.7717 1.5124 0.2995 7 8 4.4684 2.4349 1.0248 8 8 6.0621 1.1706 0.1515 9 6 6.9701 1.8942 0.8386 10 1 6.6457 2.7069 1.4717 11 6 8.3206 1.5945 0.7319 12 7 9.2053 2.2999 1.4010 13 14 8.8816 0.1884 -0.3625 14 1 8.9192 -1.0688 0.4270 15 1 7.9334 0.0338 -1.4947 16 1 10.2384 0.4826 -0.8898 17 6 3.6898 -0.7378 -0.0110 18 6 2.2235 -1.1097 -0.0005 19 8 1.7946 -2.2442 0.0059 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 2.3309 1.6427 1.0004 24 1 1.8980 1.9385 -0.7099 25 1 10.1494 2.0900 1.3267 26 1 4.2324 -1.3457 -0.7349 27 1 4.1198 -0.8531 0.9839 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306160942.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:42 Heat of formation + Delta-G solvation = -108.736927 kcal Electronic energy + Delta-G solvation = -14115.141717 eV Core-core repulsion = 11452.728753 eV Total energy + Delta-G solvation = -2662.412964 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55399 -39.05181 -36.44243 -35.31456 -32.90164 -32.32340 -27.69622 -27.14532 -25.50800 -22.88564 -19.89943 -19.31682 -18.06518 -17.31204 -16.72490 -15.90215 -15.37510 -14.87607 -14.63563 -13.87624 -13.71270 -13.44181 -13.21000 -12.49402 -12.41587 -12.32868 -12.08568 -11.51824 -11.27771 -11.13703 -10.57103 -10.42940 -9.88748 -9.77986 -9.27315 -8.75959 -8.72393 -6.44094 -4.20825 2.60762 2.94299 3.03695 3.21041 3.27341 3.34037 3.85654 4.18974 4.39690 4.56646 4.94522 5.04746 5.13451 5.26864 5.29075 5.54859 5.60317 5.69880 5.88106 6.03029 6.25665 6.45525 7.04439 7.63023 7.95733 8.16297 8.49606 8.93181 9.56729 10.63903 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.049915 B = 0.008189 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.821160 B = 3418.477174 C = 3842.501516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.625 5.625 3 C 0.117 3.883 4 C -0.086 4.086 5 H 0.118 0.882 6 C 0.417 3.583 7 O -0.535 6.535 8 O -0.244 6.244 9 C -0.384 4.384 10 H 0.111 0.889 11 C 0.068 3.932 12 N -0.871 5.871 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.259 1.259 16 H -0.281 1.281 17 C -0.144 4.144 18 C 0.521 3.479 19 O -0.538 6.538 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.281 0.719 26 H 0.113 0.887 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 -3.936 -5.246 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.360 5.360 3 C -0.006 4.006 4 C -0.106 4.106 5 H 0.136 0.864 6 C 0.262 3.738 7 O -0.431 6.431 8 O -0.152 6.152 9 C -0.460 4.460 10 H 0.128 0.872 11 C -0.137 4.137 12 N -0.510 5.510 13 Si 0.729 3.271 14 H -0.197 1.197 15 H -0.183 1.183 16 H -0.207 1.207 17 C -0.184 4.184 18 C 0.309 3.691 19 O -0.415 6.415 20 H 0.100 0.900 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.090 -4.255 -5.005 13.760 hybrid contribution 0.448 -0.329 -0.380 0.673 sum -11.642 -4.584 -5.385 13.621 Atomic orbital electron populations 1.21540 0.78056 1.03560 1.01575 1.48213 1.06588 1.07561 1.73633 1.22017 0.87944 0.86475 1.04115 1.21648 0.92421 0.94605 1.01963 0.86425 1.22272 0.83703 0.84570 0.83235 1.90616 1.82648 1.30574 1.39214 1.83500 1.15175 1.55069 1.61412 1.20660 0.85310 1.14684 1.25308 0.87179 1.24553 0.94221 0.98009 0.96872 1.69606 1.02314 1.39059 1.39993 0.86234 0.78186 0.81484 0.81190 1.19701 1.18274 1.20708 1.22344 0.94451 0.95501 1.06103 1.20926 0.89265 0.84260 0.74645 1.90698 1.78704 1.21093 1.51020 0.90006 0.91983 0.92051 0.88822 0.89626 0.90902 0.86880 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 11.14 59.84 0.67 1.61 15 2 N -0.63 -8.24 3.33 -180.29 -0.60 -8.84 15 3 C 0.12 1.56 6.66 -3.12 -0.02 1.54 15 4 C -0.09 -1.32 3.66 -90.14 -0.33 -1.65 15 5 H 0.12 1.52 8.14 -51.93 -0.42 1.10 15 6 C 0.42 8.97 7.13 36.01 0.26 9.22 15 7 O -0.54 -13.04 14.81 -19.05 -0.28 -13.33 15 8 O -0.24 -6.04 8.56 -20.69 -0.18 -6.21 15 9 C -0.38 -10.97 10.10 30.92 0.31 -10.66 15 10 H 0.11 3.47 7.09 -52.48 -0.37 3.10 15 11 C 0.07 1.88 5.49 -17.53 -0.10 1.79 15 12 N -0.87 -25.16 13.96 55.48 0.77 -24.38 15 13 Si 0.90 20.70 28.62 -169.99 -4.86 15.83 15 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 15 H -0.26 -5.74 7.11 56.52 0.40 -5.34 15 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 17 C -0.14 -2.14 6.40 -26.74 -0.17 -2.31 15 18 C 0.52 8.08 8.02 -10.86 -0.09 7.99 15 19 O -0.54 -9.90 17.35 5.55 0.10 -9.81 15 20 H 0.08 0.87 7.53 -51.93 -0.39 0.47 15 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 15 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.09 1.39 7.06 -51.93 -0.37 1.03 15 24 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 25 H 0.28 7.40 8.31 -40.82 -0.34 7.06 15 26 H 0.11 1.52 8.14 -51.93 -0.42 1.10 15 27 H 0.11 1.77 7.89 -51.93 -0.41 1.36 15 LS Contribution 245.14 15.07 3.69 3.69 Total: -1.00 -32.87 245.14 -3.62 -36.48 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -2.79 Total: -0.97 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 0.53 Total: 7.53 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.17 Total: -33.22 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.36 Total: -29.35 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.86 Total: 15.83 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.87 -3.62 -36.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160942.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.252 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds