Wall clock time and date at job start Sun Mar 29 2020 21:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46765 * 124.35132 * 2 1 4 4 C 1.54479 * 105.47599 * 197.04031 * 3 2 1 5 5 H 1.09005 * 111.00021 * 92.71601 * 4 3 2 6 6 C 1.50703 * 110.96815 * 216.46238 * 4 3 2 7 7 O 1.21213 * 119.99683 * 353.83118 * 6 4 3 8 8 O 1.34304 * 119.99842 * 173.83378 * 6 4 3 9 9 C 1.34921 * 117.00180 * 180.02562 * 8 6 4 10 10 H 1.08004 * 119.99263 * 359.97438 * 9 8 6 11 11 C 1.38745 * 120.00380 * 179.97438 * 9 8 6 12 12 N 1.31449 * 120.00198 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99963 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47174 * 270.00262 * 13 11 9 15 15 H 1.48494 * 109.46800 * 30.00310 * 13 11 9 16 16 H 1.48504 * 109.46913 * 150.00012 * 13 11 9 17 17 C 1.54623 * 101.76524 * 334.58248 * 4 3 2 18 18 C 1.34419 * 124.35346 * 180.02562 * 2 1 3 19 19 O 1.21285 * 124.93926 * 359.60277 * 18 2 1 20 20 H 1.09007 * 109.47226 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47240 * 299.99583 * 1 2 3 22 22 H 1.08993 * 109.47494 * 60.00256 * 1 2 3 23 23 H 1.08998 * 110.24541 * 78.03535 * 3 2 1 24 24 H 1.09007 * 110.23966 * 316.04219 * 3 2 1 25 25 H 0.97001 * 119.99860 * 179.97438 * 12 11 9 26 26 H 1.08997 * 110.48852 * 143.47682 * 17 4 3 27 27 H 1.09003 * 110.48668 * 266.12291 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7488 -0.4363 5 1 3.8270 0.8452 -1.5147 6 6 4.7717 1.5124 0.2995 7 8 4.4684 2.4349 1.0248 8 8 6.0621 1.1706 0.1515 9 6 6.9701 1.8942 0.8386 10 1 6.6457 2.7069 1.4717 11 6 8.3206 1.5945 0.7319 12 7 9.2053 2.2999 1.4010 13 14 8.8816 0.1884 -0.3625 14 1 8.9192 -1.0688 0.4270 15 1 7.9334 0.0338 -1.4947 16 1 10.2384 0.4826 -0.8898 17 6 3.6898 -0.7378 -0.0110 18 6 2.2235 -1.1097 -0.0005 19 8 1.7946 -2.2442 0.0059 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 2.3309 1.6427 1.0004 24 1 1.8980 1.9385 -0.7099 25 1 10.1494 2.0900 1.3267 26 1 4.2324 -1.3457 -0.7349 27 1 4.1198 -0.8531 0.9839 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306160942.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:42 Heat of formation + Delta-G solvation = -131.968882 kcal Electronic energy + Delta-G solvation = -14116.149130 eV Core-core repulsion = 11452.728753 eV Total energy + Delta-G solvation = -2663.420377 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.91020 -40.73100 -37.90436 -37.04015 -34.53518 -33.95489 -28.99121 -28.35359 -27.20553 -24.33414 -21.44141 -20.57681 -20.12495 -18.87611 -17.92174 -17.50139 -16.71237 -16.44708 -16.25187 -15.63603 -14.80768 -14.69955 -14.61755 -14.30088 -13.98597 -13.39211 -13.22642 -13.12735 -12.60891 -12.49686 -12.36623 -12.16352 -11.84189 -11.31173 -10.92324 -10.82155 -9.80122 -8.53529 -6.40729 1.26607 1.37821 1.41138 1.52395 1.58574 1.87381 2.27751 2.34231 2.92278 3.19056 3.37780 3.76710 3.94797 4.38278 4.39629 4.44569 4.56673 4.67164 4.79782 4.87106 4.89529 5.43023 5.49615 5.88862 5.93470 6.51763 6.82954 7.00551 7.56429 8.58966 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.049915 B = 0.008189 C = 0.007285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.821160 B = 3418.477174 C = 3842.501516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.618 5.618 3 C 0.122 3.878 4 C -0.076 4.076 5 H 0.156 0.844 6 C 0.423 3.577 7 O -0.566 6.566 8 O -0.250 6.250 9 C -0.407 4.407 10 H 0.060 0.940 11 C 0.017 3.983 12 N -0.917 5.917 13 Si 0.979 3.021 14 H -0.262 1.262 15 H -0.243 1.243 16 H -0.270 1.270 17 C -0.143 4.143 18 C 0.520 3.480 19 O -0.571 6.571 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.120 0.880 25 H 0.289 0.711 26 H 0.132 0.868 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 -5.082 -7.235 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.351 5.351 3 C 0.000 4.000 4 C -0.095 4.095 5 H 0.173 0.827 6 C 0.270 3.730 7 O -0.462 6.462 8 O -0.159 6.159 9 C -0.483 4.483 10 H 0.078 0.922 11 C -0.183 4.183 12 N -0.556 5.556 13 Si 0.799 3.201 14 H -0.186 1.186 15 H -0.166 1.166 16 H -0.195 1.195 17 C -0.183 4.183 18 C 0.308 3.692 19 O -0.451 6.451 20 H 0.093 0.907 21 H 0.095 0.905 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.138 0.862 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.140 -5.361 -6.983 15.816 hybrid contribution 0.608 0.141 0.323 0.703 sum -12.532 -5.220 -6.659 15.121 Atomic orbital electron populations 1.21805 0.75929 1.03801 1.03722 1.48311 1.07865 1.06666 1.72277 1.22016 0.86975 0.86937 1.04104 1.21773 0.90844 0.93895 1.03024 0.82687 1.23611 0.83647 0.83853 0.81932 1.90611 1.82983 1.32179 1.40414 1.83513 1.16072 1.54836 1.61449 1.20312 0.86851 1.14769 1.26326 0.92186 1.25550 0.93723 1.00859 0.98159 1.69707 1.03108 1.41126 1.41705 0.85124 0.78250 0.77435 0.79300 1.18648 1.16615 1.19451 1.22348 0.94644 0.95224 1.06056 1.20919 0.89527 0.84238 0.74495 1.90686 1.79144 1.22378 1.52891 0.90724 0.90514 0.89231 0.90623 0.86175 0.90124 0.85037 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 11.14 127.77 1.42 2.90 15 2 N -0.62 -14.49 3.33 -842.90 -2.81 -17.30 15 3 C 0.12 2.89 6.66 86.83 0.58 3.47 15 4 C -0.08 -2.11 3.66 -10.48 -0.04 -2.15 15 5 H 0.16 3.29 8.14 -2.38 -0.02 3.27 15 6 C 0.42 17.92 7.13 71.24 0.51 18.43 15 7 O -0.57 -28.01 14.81 20.76 0.31 -27.70 15 8 O -0.25 -12.31 8.56 14.93 0.13 -12.19 15 9 C -0.41 -23.90 10.10 67.94 0.69 -23.21 15 10 H 0.06 4.03 7.09 -2.91 -0.02 4.01 15 11 C 0.02 0.97 5.49 84.87 0.47 1.44 15 12 N -0.92 -54.17 13.96 21.62 0.30 -53.87 15 13 Si 0.98 41.84 28.62 68.60 1.96 43.80 15 14 H -0.26 -10.71 7.11 99.48 0.71 -10.01 15 15 H -0.24 -9.68 7.11 99.48 0.71 -8.98 15 16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 17 C -0.14 -3.92 6.40 30.59 0.20 -3.72 15 18 C 0.52 15.00 8.02 87.90 0.71 15.70 15 19 O -0.57 -20.17 17.35 -3.05 -0.05 -20.23 15 20 H 0.07 1.41 7.53 -2.38 -0.02 1.39 15 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.09 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.08 2.12 7.06 -2.39 -0.02 2.11 15 24 H 0.12 2.09 8.14 -2.38 -0.02 2.07 15 25 H 0.29 15.43 8.31 -92.71 -0.77 14.66 15 26 H 0.13 3.13 8.14 -2.39 -0.02 3.11 15 27 H 0.10 3.05 7.89 -2.39 -0.02 3.04 15 Total: -1.00 -73.61 245.14 5.54 -68.06 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.18 Total: 6.57 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 4.53 Total: 12.86 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -2.51 Total: -71.18 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: 0.38 Total: -60.12 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.96 Total: 43.80 kcal Total: -73.61 5.54 -68.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160942.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.906 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds