Wall clock time and date at job start Sun Mar 29 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46766 * 124.35045 * 2 1 4 4 C 1.54691 * 105.53193 * 163.10050 * 3 2 1 5 5 H 1.09006 * 110.94219 * 267.20726 * 4 3 2 6 6 C 1.50695 * 111.08520 * 143.37913 * 4 3 2 7 7 O 1.21212 * 119.99825 * 6.21540 * 6 4 3 8 8 O 1.34312 * 120.00052 * 186.21573 * 6 4 3 9 9 C 1.34916 * 117.00214 * 180.02562 * 8 6 4 10 10 H 1.08005 * 119.99882 * 359.97438 * 9 8 6 11 11 C 1.38752 * 120.00145 * 180.02562 * 9 8 6 12 12 N 1.31437 * 120.00174 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 120.00118 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46811 * 89.99679 * 13 11 9 15 15 H 1.48495 * 109.47177 * 210.00029 * 13 11 9 16 16 H 1.48506 * 109.46718 * 330.00107 * 13 11 9 17 17 C 1.54631 * 101.66995 * 25.25932 * 4 3 2 18 18 C 1.34413 * 124.34827 * 180.02562 * 2 1 3 19 19 O 1.21285 * 124.94422 * 0.41952 * 18 2 1 20 20 H 1.08993 * 109.47231 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46919 * 300.00094 * 1 2 3 22 22 H 1.09007 * 109.46701 * 59.99323 * 1 2 3 23 23 H 1.09000 * 110.24710 * 282.00818 * 3 2 1 24 24 H 1.09003 * 110.24362 * 44.00833 * 3 2 1 25 25 H 0.96998 * 120.00235 * 180.02562 * 12 11 9 26 26 H 1.09002 * 110.48855 * 216.60489 * 17 4 3 27 27 H 1.08998 * 110.48570 * 94.09550 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7043 0.7490 0.4333 5 1 3.8321 0.8459 1.5115 6 6 4.7749 1.5101 -0.3053 7 8 4.4717 2.4326 -1.0307 8 8 6.0650 1.1663 -0.1596 9 6 6.9730 1.8885 -0.8483 10 1 6.6487 2.7012 -1.4814 11 6 8.3232 1.5865 -0.7441 12 7 8.7178 0.5965 0.0251 13 14 9.5803 2.5861 -1.6982 14 1 10.0280 3.7362 -0.8724 15 1 10.7474 1.7291 -2.0277 16 1 8.9645 3.0877 -2.9531 17 6 3.6898 -0.7379 0.0092 18 6 2.2234 -1.1097 -0.0005 19 8 1.7946 -2.2442 -0.0083 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 2.3304 1.6432 -1.0003 24 1 1.8987 1.9381 0.7105 25 1 9.6617 0.3856 0.0983 26 1 4.2329 -1.3462 0.7325 27 1 4.1197 -0.8551 -0.9856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306160943.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:44 Heat of formation + Delta-G solvation = -111.743127 kcal Electronic energy + Delta-G solvation = -14060.518039 eV Core-core repulsion = 11397.974717 eV Total energy + Delta-G solvation = -2662.543322 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41316 -38.84808 -36.29864 -35.12621 -32.77545 -32.15026 -27.55513 -27.00147 -25.38965 -22.93315 -19.94220 -19.22777 -17.81405 -17.16350 -16.62528 -15.72661 -15.24433 -14.66779 -14.42764 -14.24493 -13.59876 -13.35180 -13.05275 -12.50128 -12.29829 -12.17852 -11.67893 -11.37153 -11.18620 -11.02072 -10.49370 -10.45709 -9.91606 -9.74285 -9.12409 -8.66055 -8.62948 -6.47921 -4.16409 2.71271 3.02601 3.06237 3.16479 3.21810 3.38450 3.83100 4.30136 4.53758 4.73699 5.02918 5.15509 5.23758 5.34892 5.40414 5.65316 5.65994 5.83494 6.06145 6.17938 6.52483 6.65433 7.13926 7.32626 7.86687 8.26524 8.59175 9.00518 9.74394 10.69452 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.062399 B = 0.007156 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.617181 B = 3911.962163 C = 4217.668111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.626 5.626 3 C 0.117 3.883 4 C -0.084 4.084 5 H 0.116 0.884 6 C 0.405 3.595 7 O -0.553 6.553 8 O -0.206 6.206 9 C -0.385 4.385 10 H 0.097 0.903 11 C 0.044 3.956 12 N -0.861 5.861 13 Si 0.944 3.056 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.266 1.266 17 C -0.140 4.140 18 C 0.521 3.479 19 O -0.539 6.539 20 H 0.081 0.919 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.271 0.729 26 H 0.114 0.886 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 0.628 1.331 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.361 5.361 3 C -0.005 4.005 4 C -0.104 4.104 5 H 0.134 0.866 6 C 0.251 3.749 7 O -0.451 6.451 8 O -0.112 6.112 9 C -0.461 4.461 10 H 0.115 0.885 11 C -0.161 4.161 12 N -0.497 5.497 13 Si 0.768 3.232 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.191 1.191 17 C -0.180 4.180 18 C 0.309 3.691 19 O -0.417 6.417 20 H 0.100 0.900 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.129 0.152 1.206 10.202 hybrid contribution 0.635 0.600 -0.372 0.950 sum -9.494 0.752 0.833 9.560 Atomic orbital electron populations 1.21527 0.78216 1.03499 1.01466 1.48223 1.06503 1.07651 1.73724 1.22041 0.88182 0.86387 1.03910 1.21631 0.92254 0.94641 1.01892 0.86648 1.22498 0.84678 0.84494 0.83222 1.90567 1.83053 1.31245 1.40191 1.83863 1.13623 1.53713 1.60012 1.21250 0.84988 1.14339 1.25536 0.88534 1.25350 0.96921 0.96794 0.97011 1.69984 1.16800 1.27061 1.35900 0.85670 0.79094 0.78868 0.79557 1.19832 1.20280 1.19055 1.22298 0.94005 0.95621 1.06115 1.20995 0.89387 0.84208 0.74496 1.90688 1.78767 1.21125 1.51080 0.90042 0.92114 0.92096 0.89013 0.89826 0.91927 0.86788 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.14 59.85 0.67 1.69 15 2 N -0.63 -8.87 3.33 -180.15 -0.60 -9.48 15 3 C 0.12 1.68 6.68 -3.01 -0.02 1.66 15 4 C -0.08 -1.42 3.66 -90.03 -0.33 -1.75 15 5 H 0.12 1.71 8.14 -51.93 -0.42 1.28 15 6 C 0.41 9.26 7.13 36.00 0.26 9.51 15 7 O -0.55 -13.75 14.82 -19.05 -0.28 -14.03 15 8 O -0.21 -5.58 9.73 -20.69 -0.20 -5.78 15 9 C -0.39 -10.96 9.65 30.92 0.30 -10.66 15 10 H 0.10 2.76 6.86 -52.48 -0.36 2.40 15 11 C 0.04 1.20 5.49 -17.53 -0.10 1.11 15 12 N -0.86 -24.51 13.67 55.48 0.76 -23.75 15 13 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 15 14 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 16 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 17 C -0.14 -2.32 6.39 -26.74 -0.17 -2.49 15 18 C 0.52 8.70 8.03 -10.86 -0.09 8.61 15 19 O -0.54 -10.51 17.35 5.55 0.10 -10.42 15 20 H 0.08 0.92 7.53 -51.93 -0.39 0.53 15 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 15 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.09 1.45 7.06 -51.93 -0.37 1.08 15 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 26 H 0.11 1.79 8.14 -51.93 -0.42 1.37 15 27 H 0.11 1.95 7.89 -51.93 -0.41 1.54 15 LS Contribution 246.30 15.07 3.71 3.71 Total: -1.00 -33.08 246.30 -3.80 -36.88 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -2.78 Total: -0.49 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.52 Total: 7.68 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.16 Total: -33.23 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.39 Total: -30.22 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.08 -3.80 -36.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160943.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.867 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds