Wall clock time and date at job start Sun Mar 29 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46766 * 124.35045 * 2 1 4 4 C 1.54691 * 105.53193 * 163.10050 * 3 2 1 5 5 H 1.09006 * 110.94219 * 267.20726 * 4 3 2 6 6 C 1.50695 * 111.08520 * 143.37913 * 4 3 2 7 7 O 1.21212 * 119.99825 * 6.21540 * 6 4 3 8 8 O 1.34312 * 120.00052 * 186.21573 * 6 4 3 9 9 C 1.34916 * 117.00214 * 180.02562 * 8 6 4 10 10 H 1.08005 * 119.99882 * 359.97438 * 9 8 6 11 11 C 1.38752 * 120.00145 * 180.02562 * 9 8 6 12 12 N 1.31437 * 120.00174 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 120.00118 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46811 * 89.99679 * 13 11 9 15 15 H 1.48495 * 109.47177 * 210.00029 * 13 11 9 16 16 H 1.48506 * 109.46718 * 330.00107 * 13 11 9 17 17 C 1.54631 * 101.66995 * 25.25932 * 4 3 2 18 18 C 1.34413 * 124.34827 * 180.02562 * 2 1 3 19 19 O 1.21285 * 124.94422 * 0.41952 * 18 2 1 20 20 H 1.08993 * 109.47231 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46919 * 300.00094 * 1 2 3 22 22 H 1.09007 * 109.46701 * 59.99323 * 1 2 3 23 23 H 1.09000 * 110.24710 * 282.00818 * 3 2 1 24 24 H 1.09003 * 110.24362 * 44.00833 * 3 2 1 25 25 H 0.96998 * 120.00235 * 180.02562 * 12 11 9 26 26 H 1.09002 * 110.48855 * 216.60489 * 17 4 3 27 27 H 1.08998 * 110.48570 * 94.09550 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7043 0.7490 0.4333 5 1 3.8321 0.8459 1.5115 6 6 4.7749 1.5101 -0.3053 7 8 4.4717 2.4326 -1.0307 8 8 6.0650 1.1663 -0.1596 9 6 6.9730 1.8885 -0.8483 10 1 6.6487 2.7012 -1.4814 11 6 8.3232 1.5865 -0.7441 12 7 8.7178 0.5965 0.0251 13 14 9.5803 2.5861 -1.6982 14 1 10.0280 3.7362 -0.8724 15 1 10.7474 1.7291 -2.0277 16 1 8.9645 3.0877 -2.9531 17 6 3.6898 -0.7379 0.0092 18 6 2.2234 -1.1097 -0.0005 19 8 1.7946 -2.2442 -0.0083 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 2.3304 1.6432 -1.0003 24 1 1.8987 1.9381 0.7105 25 1 9.6617 0.3856 0.0983 26 1 4.2329 -1.3462 0.7325 27 1 4.1197 -0.8551 -0.9856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306160943.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:44 Heat of formation + Delta-G solvation = -134.614655 kcal Electronic energy + Delta-G solvation = -14061.509823 eV Core-core repulsion = 11397.974717 eV Total energy + Delta-G solvation = -2663.535106 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.84733 -40.62837 -37.82636 -36.94696 -34.37149 -33.89045 -28.93564 -28.25161 -27.19059 -24.46253 -21.56667 -20.55608 -19.86206 -18.80554 -17.91311 -17.39484 -16.62395 -16.33608 -16.23510 -15.92745 -14.81779 -14.64032 -14.53942 -14.22576 -13.58487 -13.38599 -13.18030 -13.07463 -12.59783 -12.47444 -12.32264 -12.14366 -11.93879 -11.27345 -10.88808 -10.68675 -9.80573 -8.53076 -6.32698 1.28622 1.36604 1.39170 1.53229 1.61158 1.87760 2.13717 2.62034 2.97927 3.22026 3.42668 3.77230 3.99563 4.38350 4.42215 4.55718 4.63176 4.68951 4.83570 4.86547 4.91650 5.19165 5.43901 5.82952 5.91147 6.63532 6.92486 6.99327 7.74711 8.66995 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.062399 B = 0.007156 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.617181 B = 3911.962163 C = 4217.668111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.617 5.617 3 C 0.126 3.874 4 C -0.077 4.077 5 H 0.144 0.856 6 C 0.409 3.591 7 O -0.573 6.573 8 O -0.236 6.236 9 C -0.420 4.420 10 H 0.085 0.915 11 C -0.002 4.002 12 N -0.900 5.900 13 Si 1.015 2.985 14 H -0.260 1.260 15 H -0.264 1.264 16 H -0.263 1.263 17 C -0.139 4.139 18 C 0.521 3.479 19 O -0.571 6.571 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.120 0.880 25 H 0.279 0.721 26 H 0.120 0.880 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 1.538 1.588 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.350 5.350 3 C 0.003 3.997 4 C -0.097 4.097 5 H 0.162 0.838 6 C 0.257 3.743 7 O -0.471 6.471 8 O -0.144 6.144 9 C -0.496 4.496 10 H 0.103 0.897 11 C -0.203 4.203 12 N -0.537 5.537 13 Si 0.834 3.166 14 H -0.184 1.184 15 H -0.188 1.188 16 H -0.187 1.187 17 C -0.179 4.179 18 C 0.310 3.690 19 O -0.451 6.451 20 H 0.093 0.907 21 H 0.108 0.892 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.138 0.862 25 H 0.088 0.912 26 H 0.138 0.862 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.849 1.086 1.468 11.001 hybrid contribution 0.710 0.335 -0.449 0.904 sum -10.138 1.421 1.019 10.288 Atomic orbital electron populations 1.21824 0.75747 1.03836 1.03830 1.48307 1.07919 1.06599 1.72213 1.22034 0.86699 0.86795 1.04151 1.21726 0.91485 0.93850 1.02608 0.83827 1.23617 0.84480 0.83991 0.82258 1.90543 1.83261 1.32335 1.40989 1.83887 1.15227 1.54458 1.60800 1.21433 0.86211 1.15124 1.26827 0.89722 1.26485 0.98433 0.97733 0.97620 1.70066 1.17788 1.28568 1.37269 0.84657 0.76275 0.77612 0.78073 1.18448 1.18791 1.18743 1.22245 0.94599 0.95585 1.05489 1.20859 0.89376 0.84312 0.74499 1.90674 1.79112 1.22395 1.52952 0.90746 0.89187 0.90271 0.90334 0.86196 0.91215 0.86182 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 11.14 127.77 1.42 3.04 15 2 N -0.62 -15.94 3.33 -842.46 -2.81 -18.75 15 3 C 0.13 3.27 6.68 86.90 0.58 3.85 15 4 C -0.08 -2.48 3.66 -10.41 -0.04 -2.52 15 5 H 0.14 3.88 8.14 -2.38 -0.02 3.86 15 6 C 0.41 18.73 7.13 71.23 0.51 19.24 15 7 O -0.57 -28.58 14.82 20.77 0.31 -28.27 15 8 O -0.24 -13.06 9.73 14.91 0.15 -12.92 15 9 C -0.42 -24.41 9.65 67.94 0.66 -23.76 15 10 H 0.09 4.97 6.86 -2.91 -0.02 4.95 15 11 C 0.00 -0.11 5.49 84.87 0.47 0.36 15 12 N -0.90 -51.72 13.67 21.62 0.30 -51.42 15 13 Si 1.01 42.12 29.55 68.60 2.03 44.15 15 14 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 15 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 17 C -0.14 -4.53 6.39 30.59 0.20 -4.34 15 18 C 0.52 16.79 8.03 87.90 0.71 17.50 15 19 O -0.57 -21.93 17.35 -3.05 -0.05 -21.98 15 20 H 0.07 1.52 7.53 -2.39 -0.02 1.50 15 21 H 0.09 1.18 8.14 -2.39 -0.02 1.16 15 22 H 0.08 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.08 2.32 7.06 -2.39 -0.02 2.31 15 24 H 0.12 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.28 14.58 8.31 -92.71 -0.77 13.80 15 26 H 0.12 3.73 8.14 -2.39 -0.02 3.71 15 27 H 0.10 3.43 7.89 -2.39 -0.02 3.41 15 Total: -1.00 -72.23 246.30 5.59 -66.64 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.18 Total: 9.19 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 4.50 Total: 13.36 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -2.51 Total: -70.17 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: 0.40 Total: -63.17 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.23 5.59 -66.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306160943.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.971 kcal (2) G-P(sol) polarization free energy of solvation -72.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds